Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0474 ATGAGAGCTTCGGTTCAAGAAGGATCCATGGTTGAAAGGTTTGATGATGGGGATAAGAAGAAAAAGCGCCGATCTAATCGTCGACCCAAACAAAATTCCTCCCCTTCTACTTCAGCATCTGAAGTAAGCGAGATCCGTGGGGTTTCATTAGAATTTTCAGAAAAAAATGGAACACCTACTCGAGCGACGATGGCTGCAGCCTTGAGCATTTCACCAAACCAGCAAGGGCTCAATGTTACCACCCTTACTGAGCCAGGATTATCCAGAGCATTAAATGTTGATATTGTATCAATGCCCACAATGCACATCAATGACCAAGTGGAATCTTTTGTTTTACAAGATGCACAAATGCATAGTGGTGGAACTGGTTCAAAAAAAAAATATGAACCCACAGTTTGCGGAGGATCTTCTGGAACTACTACTAATAAAAAGAAAGAAGAATCAGTTCCTTGCAGTCAAATTGGGCATCATGGCCAGAGAACTTGTTTTAGTCCACACTGGTCAACAGAGGCTGTTGAAAAGGCATTAGAGGAGGGTCTTGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATGCACTTGAGGCCTACTGTAGAATTGATGGAATGCAAACAGATATTCTCATCAATGGAATTCCTGCCCAGAATAGAGCTGTGGACGGTGATATTGTCGCAGTTAAGATTGATCCTCTGTCATTGTGGGCAAAAATGAAAGGACCCAATGTGACTAGGAACAATACTGAAACACCAGAAGGTTTTAACCTCCTCACAAAAGATGATAAAGTGGCTGATAATATTTGTAAAGGAAAAGGTAAAGTAGATGCTGGGTATGAGTTTGCTCAATACAGAAGTTCCCCGAGTCAAAACAAGGAGGATGTTGATTGCAAATCTTCCTCTTCTAGAAGCAATCATTTTCAGGAAAAAGGGTACGATTATGAGGGTAATGTTTCCACGGGTTCAACAAACCATGGACTAGCTAGCCGTGATACCATTGATGGAATGCGTTGTGCTTCTTTTGATTCCTTGATGATCAACTCCTGTAGTGAAAAGGATGTGGTAATTAATGCTGTAGAAAAATTATGTTTGTTGGCTAATTCCTTTCCTTCTAAAAGACCAACTGGAAAGATTGTTTCTATTATTGAGAGGTCATCACGTCGAGAGGGTATTATCGGCCATCTTTACATGAAGCATTGCACTATTTTCAGGGACATAAGCAAAGAAGATGCAAAGAAGAATAATAACAATGTTTCTGAGCGTGAGTATATCCAGCTGATACCAACTGATGCAAAGTTTCCAAACATGGTGGTTCTTGTTAAAAAATTACCGAAGTGCATTAAGAAAAGAGTGACAAGTGGCGACGTAACAGTTGAAATGGATCTAGTAGCTGCTCAAATTGATGATTGGGCTGAAGAAAGTTTTTTACCAGAGGCTCTCATCTTGCATGTTTTTGGACGAGGTAGTGAGGTTCAGCCCCAGTTAGATGCAATTTTGTTTCAGAATGCGATCTGTTCGTCTGAATTTGCACCTGAAGCTTTGTCCTGCCTTCCATGTGTTCCTTGGGAGGTGCCTCTGAAGGAAATTCAGAGTAGAATAGATCTAAGGAATTTATGCATATTTACTATTGATCCTTCTACTGCCACAGATCTGGATGATGCACTGTCTGTCGAAAAGTTATCTAATGGAAATTATAGAGTAGGCATCCACATTGCTGATGTGTCATACTATGTTTTACCTGAGACAGCCTTAGATAGTGAAGCTCAGTTAAGGTCGACAAGTGTCTATATGTTGCAAAGGAAGTTACCTATGTTGCCTCCATTATTATCTGAGAATTTAGGTTCGCTTAATCCTGGAGTGGATCGACTTGCAGTGTCCATGCTCTTGGATATAAACCATGCGGGGGATGTTGTTGACCGTTGGATTGGTCGTACTGTTATACAATCCTGTTGTAAACTTTCATATCAACATGCTCAGGACATCATTGATATGGCTATTGGTTCAAACATTTTGGCAGATGACTATCCTAAAGTGTATGGCTGTTTTGAATTGCTTGATATTATTACATATGTGAAGAGTCTTCATGAAATTTCAAAGGTTCTGAAATGGAAGAGGTTTATTAATGGGGCTCTGTGGCTTGATAACCCCAAAATTGGGTTTCTGTTTGATGAATATGGAATTCCTTATGATAGTATGTTTTCTGAACGGAAAGAATCCAATTTTCTTGTTGAGGAATTCATGCTTTTAGCCAATATGACAGTTGCTGAAATAATCTTTAGAGCTTATCCTGATGGTGCATTACTGCGGAGGCAACCTGAACCTAATATGAGGAAGTTGAGAGACTTTGCGGCATTTTGTCAGAAACATGGTTTAAAATTGGACATATCTTCTTCTGGCCAGATCCATTGTTCATTAGAACAGATCAGGGAAAAACTGAAGGGTGACCCTGTGCTTTATGATATTGTTATTTCCTATGCTACAAGGCCAATGCAGTTGGCTTCTTACTTCTGCAGTGGAGATTTAAAGGATAATGAACATGAATGTGGTCATTATGCTTTGGCTGTCCCTTTTTACACTCATTTCACATCACCTCTGCGCCGCTATCCTGATGTTGTTGTTCATCGGACACTACTTGCTGTTATAGAGGCTGAGGAATTATATTTCAAGCATCAAAAGGCTTTACATGTTAACAAAGATTTGGAAGTGCATAAAAGATGTTTCACAGGTATTAAATTTGATCAAAATGCTGCGAAGTCCATGGAAGGTAGGGAAGCATTATCAGCTGCAGCTTTGAAGCATCAAATTCCACATACGGAAATACTTGCTGACATTGCGACTTATTGCAATCAGAGAAAGCTCGCTAGTAAAAATGTTAAGGATGCTTGTGACAAACTTTTCATGTGGTTTCTTCTGAAGAAGGAGGTCGTATTATCAGAAGCAAGAATATTGGGACTTGGTCCGAAATTCATGTCAATATATATTCAAAAGCTTGCCATTGAGCGACGCATATATTATGACGAAGTTGAAGGCTTGACTGTGGAGTGGCTTGAGTATACATCCACTCTGGTTCTTTGCATGTCTGCTACTAACAGGCGTGCATTTAGGAAGGGTGGCACTAATAAGTGGAGGACATTGGATGAAGTTGCATTGCTTACTTGCCCATTTAACCAAGAGGTTGCAGTGGTTGAATCTACCATCGATGCGGAGCTAGGTTCTAGGTCGGTCAATTCACAGACTAAAATTGACCCGGCATTTTTCCCACTAACGGTTCGTATTCTTTCAACAATTCCAGTAGTACTTCATGCTGTTGGTGGTGATGATGGACCTCTTGATATTGGTGTGAGGTTGTACATGAGTTCCTATTTTGAGTAA 3366 0.4011 MRASVQEGSMVERFDDGDKKKKRRSNRRPKQNSSPSTSASEVSEIRGVSLEFSEKNGTPTRATMAAALSISPNQQGLNVTTLTEPGLSRALNVDIVSMPTMHINDQVESFVLQDAQMHSGGTGSKKKYEPTVCGGSSGTTTNKKKEESVPCSQIGHHGQRTCFSPHWSTEAVEKALEEGLVFKALFHVNAHNALEAYCRIDGMQTDILINGIPAQNRAVDGDIVAVKIDPLSLWAKMKGPNVTRNNTETPEGFNLLTKDDKVADNICKGKGKVDAGYEFAQYRSSPSQNKEDVDCKSSSSRSNHFQEKGYDYEGNVSTGSTNHGLASRDTIDGMRCASFDSLMINSCSEKDVVINAVEKLCLLANSFPSKRPTGKIVSIIERSSRREGIIGHLYMKHCTIFRDISKEDAKKNNNNVSEREYIQLIPTDAKFPNMVVLVKKLPKCIKKRVTSGDVTVEMDLVAAQIDDWAEESFLPEALILHVFGRGSEVQPQLDAILFQNAICSSEFAPEALSCLPCVPWEVPLKEIQSRIDLRNLCIFTIDPSTATDLDDALSVEKLSNGNYRVGIHIADVSYYVLPETALDSEAQLRSTSVYMLQRKLPMLPPLLSENLGSLNPGVDRLAVSMLLDINHAGDVVDRWIGRTVIQSCCKLSYQHAQDIIDMAIGSNILADDYPKVYGCFELLDIITYVKSLHEISKVLKWKRFINGALWLDNPKIGFLFDEYGIPYDSMFSERKESNFLVEEFMLLANMTVAEIIFRAYPDGALLRRQPEPNMRKLRDFAAFCQKHGLKLDISSSGQIHCSLEQIREKLKGDPVLYDIVISYATRPMQLASYFCSGDLKDNEHECGHYALAVPFYTHFTSPLRRYPDVVVHRTLLAVIEAEELYFKHQKALHVNKDLEVHKRCFTGIKFDQNAAKSMEGREALSAAALKHQIPHTEILADIATYCNQRKLASKNVKDACDKLFMWFLLKKEVVLSEARILGLGPKFMSIYIQKLAIERRIYYDEVEGLTVEWLEYTSTLVLCMSATNRRAFRKGGTNKWRTLDEVALLTCPFNQEVAVVESTIDAELGSRSVNSQTKIDPAFFPLTVRILSTIPVVLHAVGGDDGPLDIGVRLYMSSYFE 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0474 1121 MobiDBLite consensus disorder prediction 283 305 - -
Lal22g0474 1121 SMART RNB_2 530 881 IPR001900 GO:0003723|GO:0004540
Lal22g0474 1121 Pfam RNB domain 530 879 IPR001900 GO:0003723|GO:0004540
Lal22g0474 1121 MobiDBLite consensus disorder prediction 1 57 - -
Lal22g0474 1121 SUPERFAMILY Nucleic acid-binding proteins 373 502 IPR012340 -
Lal22g0474 1121 Gene3D - 406 487 - -
Lal22g0474 1121 PANTHER DIS3-LIKE EXONUCLEASE 2 22 1119 - -
Lal22g0474 1121 MobiDBLite consensus disorder prediction 133 155 - -
Lal22g0474 1121 Pfam Dis3-like cold-shock domain 2 (CSD2) 421 500 IPR041505 -
Lal22g0474 1121 SUPERFAMILY Nucleic acid-binding proteins 492 971 IPR012340 -
Lal22g0474 1121 Gene3D - 154 255 - -
Lal22g0474 1121 SUPERFAMILY Nucleic acid-binding proteins 161 382 IPR012340 -
Lal22g0474 1121 MobiDBLite consensus disorder prediction 120 155 - -
Lal22g0474 1121 Hamap DIS3-like exonuclease 2 [DIS3L2]. 19 1096 IPR028591 GO:0000175|GO:0034427
Lal22g0474 1121 ProSitePatterns Ribonuclease II family signature. 848 872 IPR022966 -
Lal22g0474 1121 MobiDBLite consensus disorder prediction 30 44 - -
Lal22g0474 1121 PANTHER RIBONUCLEASE 22 1119 - -
Lal22g0474 1121 MobiDBLite consensus disorder prediction 283 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0474 Lal-Chr22 3140941 3151426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0474 K18758 - gmx:100815252 1505.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0474 22 3140941 3151426 Lal22g0474 22 3140941 3151426 ECH
Lal22g0474 22 3140941 3151426 Lal6g0511 6 3268484 3274379 LSH