Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0478 ATGTTCACATTACCTCACCAAAACGCAGACAATGCTATGAGAAACGACGATGAGCTACGAATGTGGTTGAACCAGATTCCTAATCCGACACCATATATGATCAATCTTCATCGTGATCACGTGTCTTCTTTCACGTCGTCTGAATCTTCTCTTATGAATCCTTTCTCCTTGTATGGTAATAAATCATCATTTGAATGTTCATCTACTTTTCATAATAGGAACGTTCGTTTTCAGTCTCTGTCTAACTCGGATATCAGTGATGATGCTTTGAGACTGTGTACGTATTTCTCTGGAATGAACATTAGGAATGATCATGAACCTGAAAGTGGAAATGATAGTACTATTGGTGCTAAAACCATGGGATATGATAACATGGGGTCACTTACACTCCCTTGTTCTTCGAATCCAAATATTCGTTCCTTCATTAAACAAGAAACAACTAACCCATTTCAACATTTTGACAATGAGGCCACCCCAGATACTAAAGGTTACACTTTTGTTCCTCTTCCTCCATTTGAGAAACAGGGTAGAACACCATGTTATGGAGAATTTCAACTTCACAACCCAAACCCATCTTTTGCTACTACCCCTTATCCTTGTGATGATTTTCTATGCTCACAATCGCAGACACAGTCACTTGATGTAGACTGGAATGTGAACAGTCCCGTCGTGTTCTCTCCAAACGTGCAACAAAGTCTTGCTTCGAATCTAAATACTCAGAGGGCAAGGGCAACTACCAACACTGATCTTTCCCAAATGAGAAATGGAGAGGACCCTTTAGCATTTAAATGTGATAATAGTTTCATCTTACAAGGGGAAGATGTAAAATATTGTGTTCACAATGCGTGCATGTGCGAAAACAATTCCCGAAATGAGGTTGGAATTCAAGATGTGGGACAGAAAGTTCCTCAATTCATTCCAAATGTTCCTGTTAGTCATGAAAATAGTAGCAAAAGCACTCTTGGAAGTGTTATCCAAGAGTCCTTGCTTCACAAATTTTATTCTCTGGCTGAGACACAAGGTTTCATATATGTTCTGGCTAAGGATCAGAATGGTTGTCGCTTCCTACAGAGAATGGTTGATGATGGACCCTCTGAAGTGATGAGAGTGGTGTTTAATGGAGTCATAGGCTATGTTGTTGAACTCATGATGGACCCTTTTGGGAACTATCTTGTGCAGAAATTGCTTGATGTTTGTAGAGAAGATCAAAGGTTGCAGATTGTGATCATGCTGACTAGCGAAACTGGGCAACTTGTCACAACCTCCATGAACACGCACGGTACACGCGTGGTTCAGAAGCTGATTGAGACCCTCAAGACTAAGAAGCAAGTTTCATTGCTAAGGTCTGCTATTCAACCAGGTTTTGTTGATCTTATTAAGGATCTGAATGGAAATCATGTTATACAACGTTGCTTGCAATGCCTAAGCTGTCAAGATAATGAGTTTATTTTTGATGCTGCTACGAAGTTCTGTGTTGATATAGCTACTCATCAACATGGGTGTTGTGTACTACAACGTTGCATTGATTCTTCTATGGGTAAGTATAGGGATAAGCTGTTGACAGAAATATGCAGACATGCCCTTCTCCTCGCTCAAGATCCATATGGAAATTATGTGATTACCCATATTATAGAGATGAAGATCCCTAATGTCTCAGCTAAACTGATTTCAAGGTTCAAAGGGAACTATGTATACCTCTCCATGCAAAAATTTAGCAGTCACGTGGTTGAAAGTTGCCTCAAACATGTTGCAGAGAGTACTGCTAGAATAGTCCGAGAATTGCTCTCTGCTCCTCACTTTGAGCAGCTGCTGCAAGATCCATATGCTAACTATGTTGTTCAACGTGCTCTAGGAGTGACCAAGGGTCCTCTTCATGCATCTTTGGTTGAAGCGGTTCGCCCTCACAAATTCTTGCGCAACAGCCCATATTGCAAGAGGATTTTCTCTGGAGGGCTCCTTAAGAAGTGA 1968 0.4075 MFTLPHQNADNAMRNDDELRMWLNQIPNPTPYMINLHRDHVSSFTSSESSLMNPFSLYGNKSSFECSSTFHNRNVRFQSLSNSDISDDALRLCTYFSGMNIRNDHEPESGNDSTIGAKTMGYDNMGSLTLPCSSNPNIRSFIKQETTNPFQHFDNEATPDTKGYTFVPLPPFEKQGRTPCYGEFQLHNPNPSFATTPYPCDDFLCSQSQTQSLDVDWNVNSPVVFSPNVQQSLASNLNTQRARATTNTDLSQMRNGEDPLAFKCDNSFILQGEDVKYCVHNACMCENNSRNEVGIQDVGQKVPQFIPNVPVSHENSSKSTLGSVIQESLLHKFYSLAETQGFIYVLAKDQNGCRFLQRMVDDGPSEVMRVVFNGVIGYVVELMMDPFGNYLVQKLLDVCREDQRLQIVIMLTSETGQLVTTSMNTHGTRVVQKLIETLKTKKQVSLLRSAIQPGFVDLIKDLNGNHVIQRCLQCLSCQDNEFIFDAATKFCVDIATHQHGCCVLQRCIDSSMGKYRDKLLTEICRHALLLAQDPYGNYVITHIIEMKIPNVSAKLISRFKGNYVYLSMQKFSSHVVESCLKHVAESTARIVRELLSAPHFEQLLQDPYANYVVQRALGVTKGPLHASLVEAVRPHKFLRNSPYCKRIFSGGLLKK 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0478 655 ProSiteProfiles Pumilio RNA-binding repeat profile. 450 485 IPR001313 GO:0003723
Lal6g0478 655 SMART pum_5 450 485 IPR001313 GO:0003723
Lal6g0478 655 SMART pum_5 374 409 IPR001313 GO:0003723
Lal6g0478 655 SMART pum_5 486 521 IPR001313 GO:0003723
Lal6g0478 655 SMART pum_5 413 448 IPR001313 GO:0003723
Lal6g0478 655 SMART pum_5 338 373 IPR001313 GO:0003723
Lal6g0478 655 SMART pum_5 595 630 IPR001313 GO:0003723
Lal6g0478 655 SMART pum_5 522 557 IPR001313 GO:0003723
Lal6g0478 655 SMART pum_5 558 592 IPR001313 GO:0003723
Lal6g0478 655 CDD Pumilio 343 649 IPR033712 GO:0003723
Lal6g0478 655 ProSiteProfiles Pumilio RNA-binding repeat profile. 374 410 IPR001313 GO:0003723
Lal6g0478 655 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 190 655 - -
Lal6g0478 655 ProSiteProfiles Pumilio RNA-binding repeat profile. 413 448 IPR001313 GO:0003723
Lal6g0478 655 ProSiteProfiles Pumilio RNA-binding repeat profile. 593 630 IPR001313 GO:0003723
Lal6g0478 655 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 190 655 - -
Lal6g0478 655 ProSiteProfiles Pumilio RNA-binding repeat profile. 338 373 IPR001313 GO:0003723
Lal6g0478 655 Pfam Pumilio-family RNA binding repeat 526 540 IPR001313 GO:0003723
Lal6g0478 655 Pfam Pumilio-family RNA binding repeat 491 524 IPR001313 GO:0003723
Lal6g0478 655 Pfam Pumilio-family RNA binding repeat 562 594 IPR001313 GO:0003723
Lal6g0478 655 Pfam Pumilio-family RNA binding repeat 455 485 IPR001313 GO:0003723
Lal6g0478 655 Pfam Pumilio-family RNA binding repeat 378 408 IPR001313 GO:0003723
Lal6g0478 655 Pfam Pumilio-family RNA binding repeat 343 373 IPR001313 GO:0003723
Lal6g0478 655 Pfam Pumilio-family RNA binding repeat 599 617 IPR001313 GO:0003723
Lal6g0478 655 Pfam Pumilio-family RNA binding repeat 417 444 IPR001313 GO:0003723
Lal6g0478 655 SUPERFAMILY ARM repeat 336 648 IPR016024 -
Lal6g0478 655 ProSiteProfiles Pumilio RNA-binding repeat profile. 522 557 IPR001313 GO:0003723
Lal6g0478 655 Gene3D - 319 651 IPR011989 -
Lal6g0478 655 ProSiteProfiles Pumilio RNA-binding repeat profile. 486 521 IPR001313 GO:0003723
Lal6g0478 655 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 317 655 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0478 Lal-Chr6 3041182 3044900 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0478 - - lang:109359467 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0478 6 3041182 3044900 Lal6g0478 6 3041182 3044900 ECH
Lal6g0478 6 3041182 3044900 Lal4g0372 4 2537374 2542584 PCT
Lal4g0372 4 2537374 2542584 Lal6g0478 6 3041182 3044900 PCT