Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0372 ATGTTTCAGATATGGGAACACAATAAGAGAAACACACAACAGAACACAAAGGTTGTTGTTGATCCTAGTACCAGGTTTATTGGTATGATTCCAAACTCACCTTCATCGTGTTTCAATCTCAATCACCATCTTCAACCTGATCATGTCGCTGTTGGTTCCCCCATTAAGAGGGTCTCTCCTTCTTCCTCTTCTAACCCTTTCTCCATTGATGCTTCTTCTTCTCCATATTCAGCTCCTTTTATTAACGATCAATGTTCTACTAAACTCTTCTTGGACTCTGAGTCATCGTGTTTTGATCATGATCTGAAACTCTCCGATTATTTCGCTAGAATGAACGTCACCGATGGAAACAAAAACATGGACTCGTCCTATGTTTGTTCTTTCGATGCAAATAATAATGATGTTGTTCCCTTTTTCAATGAAACAGGAACAACCCCATTTCACCATTTTTGCAATGCTGGTGTTTCAGTTCCAAAAGCTTACACTTTTGGCACCCCACTTGAGTCTTACGATTGGAACACGAACCATGTATATCAACATGTCATGGAACAGAGGAAAAAACAGGGTTCACAGTTTCAATTGCAAAACCCATCTTTTATTAGCAACCCTTTTCTTTACGATCCTTTTATGGGATCACAGTCACAATCACAACCTTTTGGAATGGATGTCAAAAAACCCTTTACATTCTCTCAGACTCAGATTATGCATCCAAAAATTGCTTTGAATTCTAATGCCAATATCCCTCTTCCTCCACCACATTGTGTTCCTGCAGCAAATGAAATGGCAATGGCAATGGCAAAGGAAGCTGAATATCCCCAATGTTTTTCTCAAAGGAGAAATAATGGAATTGACCCTGCAACGTGTGCATGTGATAATAGCTTTATCACACAAGGGAAAGACATGAAACATTGCATTGAAAATGGGAACAATTCTATGAGGTGCTACAAGAAGAGTAACCGTGGTGAGGTTTGTGAAAACAATGACAATAACACTCTTGCTGCTAATGATTTCTCACTACGGCTGCTGCTGAATTTTTACTCTCTTGCTGAGGTGCATGATTACATATACAACATGGCAAAGGATCAGAGTGGTTGTAGATTCTTGCAGCGAATGGTTGATGAAGGAACACATGAAGATATGAGAATGGTGTTTGAAGGGATCATTGAAAATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTATCTTGTGCAAAAGTTGCTTAGTGTGTGCAGTGAAGACCAAAGGTTACAAATTGTGCTTATGTTGACAAATGAGTCAGGGCAACTTGTACGAATCTCTTTAAATACTCACGGGACACGCGTGGTACAGAAGTTGATTGAGACCCTCAATTCTGCCCAACAAATTTCATTAGTGAGGTCTGCTATACAACCTGGTTTTCTTGATCTGATTAAGGATTTGAATGGAAATCATGTTATACAACGTTGTTTGCAATGCCTCAGTTGTCAAGATAATGAGTTTATTTTTGATGCTGGCGTGAAGTTTTGTGTTGACATAGCTACTCATCGACATGGATGCTGTGTACTGCAACGTTGCATTGATCACTCTGTAGGAAAACATCGAGATAAGCTGGTCACTGAGATTTGCAAGCATGGGCTTTTCCTCGCTCAAGATCCATTTGGAAATTATGTTGTTCAACATATTATAGAGATGGAGATTCCAACTGCTTCAACCAAAATGAATGCTCAGTTCAAAGGCAACTATGTAAACCTCTCTACACAAAAATTTAGCAGTCACGTAGTTCAAAGATGCCTTGAGTATGTTGCAGACAGTAGATCAAGAATTGTCCGAGAATTTTTGTCTGATCCTCACTTCGAACAGTTGTTGCAAGATCCTTTTGCCAACTATGTCATTCAAACTGCTCTAGCATTCACCAAGGGTTCTCTGCATGCATCTTTGGTTGAAGCAGTTCGCCAATACAAAATCTTGCGCACAAGCCCATATTGCAAGGGGATTTTCTCAGGAAGCCTACTCAAGAAGTGA 2004 0.3972 MFQIWEHNKRNTQQNTKVVVDPSTRFIGMIPNSPSSCFNLNHHLQPDHVAVGSPIKRVSPSSSSNPFSIDASSSPYSAPFINDQCSTKLFLDSESSCFDHDLKLSDYFARMNVTDGNKNMDSSYVCSFDANNNDVVPFFNETGTTPFHHFCNAGVSVPKAYTFGTPLESYDWNTNHVYQHVMEQRKKQGSQFQLQNPSFISNPFLYDPFMGSQSQSQPFGMDVKKPFTFSQTQIMHPKIALNSNANIPLPPPHCVPAANEMAMAMAKEAEYPQCFSQRRNNGIDPATCACDNSFITQGKDMKHCIENGNNSMRCYKKSNRGEVCENNDNNTLAANDFSLRLLLNFYSLAEVHDYIYNMAKDQSGCRFLQRMVDEGTHEDMRMVFEGIIENVVELMMDPFGNYLVQKLLSVCSEDQRLQIVLMLTNESGQLVRISLNTHGTRVVQKLIETLNSAQQISLVRSAIQPGFLDLIKDLNGNHVIQRCLQCLSCQDNEFIFDAGVKFCVDIATHRHGCCVLQRCIDHSVGKHRDKLVTEICKHGLFLAQDPFGNYVVQHIIEMEIPTASTKMNAQFKGNYVNLSTQKFSSHVVQRCLEYVADSRSRIVREFLSDPHFEQLLQDPFANYVIQTALAFTKGSLHASLVEAVRQYKILRTSPYCKGIFSGSLLKK 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0372 667 ProSiteProfiles Pumilio RNA-binding repeat profile. 425 460 IPR001313 GO:0003723
Lal4g0372 667 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 326 667 IPR033133 GO:0003723
Lal4g0372 667 ProSiteProfiles Pumilio RNA-binding repeat profile. 462 497 IPR001313 GO:0003723
Lal4g0372 667 SUPERFAMILY ARM repeat 346 660 IPR016024 -
Lal4g0372 667 Gene3D - 339 664 IPR011989 -
Lal4g0372 667 CDD Pumilio 353 661 IPR033712 GO:0003723
Lal4g0372 667 SMART pum_5 462 497 IPR001313 GO:0003723
Lal4g0372 667 SMART pum_5 350 385 IPR001313 GO:0003723
Lal4g0372 667 SMART pum_5 386 421 IPR001313 GO:0003723
Lal4g0372 667 SMART pum_5 498 533 IPR001313 GO:0003723
Lal4g0372 667 SMART pum_5 534 568 IPR001313 GO:0003723
Lal4g0372 667 SMART pum_5 607 642 IPR001313 GO:0003723
Lal4g0372 667 SMART pum_5 570 604 IPR001313 GO:0003723
Lal4g0372 667 SMART pum_5 425 460 IPR001313 GO:0003723
Lal4g0372 667 ProSiteProfiles Pumilio RNA-binding repeat profile. 570 605 IPR001313 GO:0003723
Lal4g0372 667 ProSiteProfiles Pumilio RNA-binding repeat profile. 350 385 IPR001313 GO:0003723
Lal4g0372 667 ProSiteProfiles Pumilio RNA-binding repeat profile. 498 533 IPR001313 GO:0003723
Lal4g0372 667 Pfam Pumilio-family RNA binding repeat 503 536 IPR001313 GO:0003723
Lal4g0372 667 Pfam Pumilio-family RNA binding repeat 467 497 IPR001313 GO:0003723
Lal4g0372 667 Pfam Pumilio-family RNA binding repeat 542 557 IPR001313 GO:0003723
Lal4g0372 667 Pfam Pumilio-family RNA binding repeat 574 597 IPR001313 GO:0003723
Lal4g0372 667 Pfam Pumilio-family RNA binding repeat 390 420 IPR001313 GO:0003723
Lal4g0372 667 Pfam Pumilio-family RNA binding repeat 611 631 IPR001313 GO:0003723
Lal4g0372 667 Pfam Pumilio-family RNA binding repeat 429 459 IPR001313 GO:0003723
Lal4g0372 667 Pfam Pumilio-family RNA binding repeat 355 388 IPR001313 GO:0003723
Lal4g0372 667 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 168 667 - -
Lal4g0372 667 ProSiteProfiles Pumilio RNA-binding repeat profile. 386 422 IPR001313 GO:0003723
Lal4g0372 667 ProSiteProfiles Pumilio RNA-binding repeat profile. 534 569 IPR001313 GO:0003723
Lal4g0372 667 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 168 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0372 Lal-Chr4 2537374 2542584 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0372 - - aip:107608433 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0372 4 2537374 2542584 Lal4g0372 4 2537374 2542584 ECH
Lal6g0478 6 3041182 3044900 Lal4g0372 4 2537374 2542584 PCT
Lal4g0372 4 2537374 2542584 Lal6g0478 6 3041182 3044900 PCT