Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0310 ATGGCTCTGTTTTCCTCTGTTTCACTGTCTCCACTCTGCATGGCTCTCTTCTTTTTCTTCTTATTAAATTCCTTGTATCTCTCTTTCTCTGCTACACTCAACCATAACAGCAAAAACAACTCATTCTCACTCTCTTTCCCTCTCTCCACAACAACACTTTCAAATTCCAAAACCAACCCAAAACTCAAAACCCTTTCTTCTTCTTCTTCTTCTTACAACCTTAAATCCAGTTTCAAGTATTCAATGGCTCTGGTAGTTTCTCTTCCCATTGGGACACCTCCACAAATTCAACAAATGGTGTTGGACACAGGAAGCCAACTCTCTTGGATTCAGTGCCATAACAAAGCTCCTAAAAAAACACCTCCTACGACGTCGTTTGACCCTTCTCTCTCTTCTTCTTTCTCCATCATCCCATGCACTCACCCACTCTGCAAACCCCGCGTTCCCGATTTTACCCTTCCCACCACCTGCGACCAGAACCGCCTCTGCCACTACTCTTACTTCTACGCTGACGGCACCTACGCTGAGGGCAATCTCGTCAGAGAAAAACTAACCTTCTCTCCTTCCCAAACTACCCCTCCCCTCACCCTCGGTTGCGCCACAGAGTCCACTGACACCAGGGGCATTTTGGGTATGAATCTGGGTCGCTTGTCCTTCCCTTCCCAAGCTAAAATCACTAAATTCTCATACTGTGTTCCGGTTCGACAACCTCGAACCGGTTCCGCTTCCGGTTCGTTCTACCTTGGAAATAACCCGAATTCAAATCGGTTCCGTTACGTTAACATGTTGACCTTCACTCAAAGTCAACGCATGCCTAACCTGGACCCATTAGCGTACACTGTTCCATTGCAAGGTATAAGAATCGGTGGAAAGAAGCTGAACATCCCAGCCTCTGTTTTCAAACCCAACGCTGGTGGGTCGGGTCAGACCATGGTTGATTCCGGATCCGAATTCACTTTCTTAGTTGATGAGGCTTATAATACGGTGCGGGAGGAGGTAGTAAGATTGGTGGGACCCAAATTGAAGAAGGGTTACGTATACGGTGATGTTGCTGATATGTGTTTTGATGCTGATGCAATTCAAATCGGACGGTTGTTAGGGGACATGGTTTTTGAATTCGAGAAAGGCGTGGAGATAGTGATTCCTAAGGAGAGGATGATTGCTGACGTGGAAGGTGGGATCCACTGTTTAGGGATTGGAAGGTCTGAAAGATTGGGTGCGGCAGGTAACATTATTGGGAACATCCACCAGCAGAATCTATGGGTGGAGTTTGATTTGGCCAATCATAGGGTGGGTTTCGGTGAAGCTGATTGTAGCAGATTAGGTTAA 1329 0.465 MALFSSVSLSPLCMALFFFFLLNSLYLSFSATLNHNSKNNSFSLSFPLSTTTLSNSKTNPKLKTLSSSSSSYNLKSSFKYSMALVVSLPIGTPPQIQQMVLDTGSQLSWIQCHNKAPKKTPPTTSFDPSLSSSFSIIPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVREKLTFSPSQTTPPLTLGCATESTDTRGILGMNLGRLSFPSQAKITKFSYCVPVRQPRTGSASGSFYLGNNPNSNRFRYVNMLTFTQSQRMPNLDPLAYTVPLQGIRIGGKKLNIPASVFKPNAGGSGQTMVDSGSEFTFLVDEAYNTVREEVVRLVGPKLKKGYVYGDVADMCFDADAIQIGRLLGDMVFEFEKGVEIVIPKERMIADVEGGIHCLGIGRSERLGAAGNIIGNIHQQNLWVEFDLANHRVGFGEADCSRLG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0310 442 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190|GO:0006508
Lal6g0310 442 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 441 - -
Lal6g0310 442 CDD pepsin_A_like_plant 85 438 IPR034161 -
Lal6g0310 442 Pfam Xylanase inhibitor C-terminal 278 434 IPR032799 -
Lal6g0310 442 PANTHER ASPARTYL PROTEASE-RELATED 13 441 IPR001461 GO:0004190|GO:0006508
Lal6g0310 442 Gene3D Acid Proteases 65 248 IPR021109 -
Lal6g0310 442 Pfam Xylanase inhibitor N-terminal 85 250 IPR032861 -
Lal6g0310 442 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Lal6g0310 442 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Lal6g0310 442 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
Lal6g0310 442 SUPERFAMILY Acid proteases 85 440 IPR021109 -
Lal6g0310 442 ProSiteProfiles Peptidase family A1 domain profile. 84 434 IPR033121 -
Lal6g0310 442 Gene3D Acid Proteases 249 441 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0310 Lal-Chr6 1983460 1984788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0310 86 441 Miscellaneous Gene Families AT1G44130 23.529 9.19e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0310 - - gmx:100796435 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0518 3 3779652 3780812 Lal6g0310 6 1983460 1984788 PCT
Lal6g0310 6 1983460 1984788 Lal3g0518 3 3779652 3780812 PCT