Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0518 ATGTTCACTACTTCTCTCTCATCATCAGCTAATAATAACTACAATTTCAAGTCCAGTTTCAAATACTCAATGGCTCTTATAGTATCACTTCCCATTGGTACACCACCACAGATTCAACAAATGGTTTTAGACACTGGAAGTCAACTTTCTTGGATTCAATGTCACAATAAGGTACCAAAAAAACAACACCCTCCAACGGCGTCGTTTGATCCTTCTCTCTCTTCCACTTTCTCTACCCTCCCTTGTACTCACCCTGTTTGTAAGCCTCTTATTCCCGATTTTACCCTCCCCACTTCCTGTGACCAGAACCGTTTATGTCACTACTCTTACTTCTACGCTGATGGAACCTACGCTGAGGGTAATCTCGTCAGAGAGAAATTCACTTTCTCACCTTCCGTAATTACCCCTCCTCTTATTCTCGGTTGTGCTACAGAATCCAGCGATTCTAGGGGTATTTTAGGAATGAATCTCGGACGGTTATCTTTCACTTCCCAAGCTAAAGTGAATAAATTTTCATACTGTGTTCCCACTAGAAGGACCGGACCCGTACCAACCGGGTCGTTCTACCTTGGTAATAACCCGAACTCTCTCGGGTTCAAATATGTCCAAATGTTGACTTTTCCTCAAAGTCAACGCATGCCGAACCTGGACCCTTTGGCTTACACCGTTGCGTTGCAGGGGATACGAATCCAAGGGAAGAAACTAAACATTTCTCAATCAATTTTCCGACCCGATTCTGGTGGGTCGGGTCAAACCATGGTTGATTCAGGATCCGAATTCACTTATCTCGTTGACGAGGCTTATAACAAGGTGAAGGAGGAAGTGGTTAGAATAGTGGGGCCCAGGATGAAGAATGATTACGTCTACGGTAACGTCGCTGACATGTGTTTCGATCGTGGTGATGTAATTGAGATCGAACGGTTGATAGGGGGTATGGTTTTTGAGTTCGAGAAAAGAGTGGAGATAGTGGTTCCAAAAGAAAGGGTACTTGCTGACGTGGGTGGTGGGGTCCACTGCATAGGAATTGGGAACTCTGATAAATTGGGTGCAGCTAGTAACATAATTGGGAATTTTCATCAGCAAAATATGTGGGTGGAGTTTGATGTGGCCAATAGGAGAGTGGGTTTCGGTAGAGCTGATTGTAGCAGATTAACTAAGTAA 1161 0.441 MFTTSLSSSANNNYNFKSSFKYSMALIVSLPIGTPPQIQQMVLDTGSQLSWIQCHNKVPKKQHPPTASFDPSLSSTFSTLPCTHPVCKPLIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSPSVITPPLILGCATESSDSRGILGMNLGRLSFTSQAKVNKFSYCVPTRRTGPVPTGSFYLGNNPNSLGFKYVQMLTFPQSQRMPNLDPLAYTVALQGIRIQGKKLNISQSIFRPDSGGSGQTMVDSGSEFTYLVDEAYNKVKEEVVRIVGPRMKNDYVYGNVADMCFDRGDVIEIERLIGGMVFEFEKRVEIVVPKERVLADVGGGVHCIGIGNSDKLGAASNIIGNFHQQNMWVEFDVANRRVGFGRADCSRLTK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0518 386 Pfam Xylanase inhibitor N-terminal 27 181 IPR032861 -
Lal3g0518 386 Gene3D Acid Proteases 190 386 IPR021109 -
Lal3g0518 386 CDD pepsin_A_like_plant 27 381 IPR034161 -
Lal3g0518 386 Pfam Xylanase inhibitor C-terminal 220 377 IPR032799 -
Lal3g0518 386 SUPERFAMILY Acid proteases 27 385 IPR021109 -
Lal3g0518 386 Gene3D Acid Proteases 5 189 IPR021109 -
Lal3g0518 386 ProSiteProfiles Peptidase family A1 domain profile. 26 377 IPR033121 -
Lal3g0518 386 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 386 - -
Lal3g0518 386 PANTHER ASPARTYL PROTEASE-RELATED 8 386 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0518 Lal-Chr3 3779652 3780812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0518 28 386 Miscellaneous Gene Families AT1G44130 23.393 1.49e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0518 - - aip:107631248 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0518 3 3779652 3780812 Lal6g0310 6 1983460 1984788 PCT
Lal6g0310 6 1983460 1984788 Lal3g0518 3 3779652 3780812 PCT