Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0082 ATGAGTCAGAGTGTTGAAGGTATTAAGGGTGGAGGAGGATCCGTTAAGCTAGGGACAACTGGAACAATTGGTTCCTTAATCACAAAGGAATTGGATGAGATATCTTCAAGAAGTAAACCTCGAACACTTGCTGTTTCATTTGCACGTGGCCTTACAACTCCAAAAAGACTACAACCAAGAAAATCATCACACGAAGCAAGTAGCAGTGGCAGCAGTAGTAACAATACAAAACATAGAAGCACTGGAATGTCACATACTAATGCCAAAAATGATCATAGAATACCCATGCTAGGATCTAGTTGGTCTATTTGTCAAAGACACTTTCCTTTTTCTTTTTCCACAATAATGAACCAAACCAAAGTCTTGTCCATGGCCAACAAGATGATTCACGAAACAACTAGGAAGATGTCACAACTCTGTAGGAAGGTTGTTCTGGTTAACGTTCGTTGGGAAGTGCTTCAAAGGGTATCTTTTGTTGGACAGTTTTTTCGATTCATTTGGGATAGGCTTGTGGTTTGTTCTGTCGGAAAACCACCTGAGTATCACAGATTGCCGCTTCAGGGTTCTTCACCTTTTATTGAAGAAGGGTTCATGCATGAACACCACACGGTCATGAATAGTGGTTATGACACGGATTCGGATTTGGTCAACCTGAAGATCAGTTTATTAGGAGATTGTTATATTGGAAAAACTACATTTGTGATAAAGTATGTAGGGAATGAGCAAGAAAAGAAGAGTCTGCAGATGGAAGGACTAAATCTAATGGACAAAACATTGTTTGTTCAAGGAGCTCGCATTTCATTTTCTATATGGGATGTTGCAGGTGACAAAAGGTCCTTGGATCAAATTCCCATGGCTTGTAAAGATTCTGTTGCAGTTTTGATTATGTTCGATCTCACAAGTCGTTCTACACTAAATAATGCTGTTGGATGGTATAGTGAAGCAAGAAAGTGGAATCAGACTGCAATTCCCATTCTAATAGGCACCAAATTTGATGATTTTGTTACACTCCCCCCAGATTTGCAGTGGACAATTGTAACACAGGCAAGGGCTTATGCAAGGGCAATGAATGCAACCCTTTTCTTTTCAAGTGCAACCCACAATATAAATGTGAACAAAATTTTCAAGTTTATAATGGCGAAGCTCTTTAACTTGCCATGGACAGTAGAAAGAAATTTAAGAGTTGGAGAGCCCATAATAGACTTCTGA 1209 0.3937 MSQSVEGIKGGGGSVKLGTTGTIGSLITKELDEISSRSKPRTLAVSFARGLTTPKRLQPRKSSHEASSSGSSSNNTKHRSTGMSHTNAKNDHRIPMLGSSWSICQRHFPFSFSTIMNQTKVLSMANKMIHETTRKMSQLCRKVVLVNVRWEVLQRVSFVGQFFRFIWDRLVVCSVGKPPEYHRLPLQGSSPFIEEGFMHEHHTVMNSGYDTDSDLVNLKISLLGDCYIGKTTFVIKYVGNEQEKKSLQMEGLNLMDKTLFVQGARISFSIWDVAGDKRSLDQIPMACKDSVAVLIMFDLTSRSTLNNAVGWYSEARKWNQTAIPILIGTKFDDFVTLPPDLQWTIVTQARAYARAMNATLFFSSATHNINVNKIFKFIMAKLFNLPWTVERNLRVGEPIIDF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0082 402 MobiDBLite consensus disorder prediction 1 20 - -
Lal6g0082 402 MobiDBLite consensus disorder prediction 63 83 - -
Lal6g0082 402 Pfam Ras family 219 382 IPR001806 GO:0003924|GO:0005525
Lal6g0082 402 CDD Spg1 218 399 IPR017231 -
Lal6g0082 402 MobiDBLite consensus disorder prediction 33 92 - -
Lal6g0082 402 PANTHER MONOMERIC G-PROTEIN 196 401 - -
Lal6g0082 402 PRINTS Transforming protein P21 ras signature 218 239 - -
Lal6g0082 402 PRINTS Transforming protein P21 ras signature 259 281 - -
Lal6g0082 402 PRINTS Transforming protein P21 ras signature 320 333 - -
Lal6g0082 402 PRINTS Transforming protein P21 ras signature 360 382 - -
Lal6g0082 402 Gene3D - 208 392 IPR027417 -
Lal6g0082 402 ProSiteProfiles small GTPase Rab1 family profile. 212 402 - -
Lal6g0082 402 SMART rho_sub_3 220 384 IPR001806 GO:0003924|GO:0005525
Lal6g0082 402 SMART rab_sub_5 218 385 - -
Lal6g0082 402 PANTHER - 196 401 - -
Lal6g0082 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 395 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0082 Lal-Chr6 487363 492377 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0082 K07976 - gmx:100788413 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0082 6 487363 492377 Lal6g0082 6 487363 492377 ECH
Lal18g1550 18 17227691 17230045 Lal6g0082 6 487363 492377 LSH
Lal18g1550 18 17227691 17230045 Lal6g0082 6 487363 492377 PCT
Lal6g0082 6 487363 492377 Lal18g1550 18 17227691 17230045 PCT