Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0042 ATGGATATTTCAGACTATACAAGGGTTGTCTTTGACAAAATTCATAAATTTGAGCCTGAATATGCTGTAAAGATTATTAGATATCTTCAATTACAAGACAATGTTGAGCAAGAAATGGCTAAGTTAGCTTCATGCCATGACCATTTCATCCGCGAAGTAGCATTTAAGGCGAAAGTGGTCATTCAGGGATTGGCTGCTAGACCTGTCATATTTCCAATCTCACCTCCCCTCAACAATGAACAAGGTTTGAGCCATTTATTAGCAATCTCTCCAATAACTCCTACTTCGCCACCAAGCTTTCAGGTTCCTTCCCCATTTTGGAATGCACGTTCTGTGAGAAACACCAATCCAGACACAGTTAAGAAGCAGCCACAGTTGTTCAGTTTGGAGAATTGCATAGAGCCTGTAAATACTGAGATCAGAGGGACCGCTCATGATTACTTTCGCTTAGATGCTCCTGCTGCCAATTTTGGTGTAAAAGTTGGTAGAAGGCATTCAAGGCTGTCTGAATTTCCAGTAAAAACATGTTACTATTTCAACAATGGGTACTGTAAGCATGGAACTAGCTGTAGATACTATCATGGTCTACTTGTTTCAGAGAGCTTCCCTCATATGTATGGAAGTGATGCTAATAATGAGGGTCAGATGTTTTTGCCTGGGTCACTGGCACAGTTAGAAAAAGAAATTGTCGAGCTCTTAAAACCAAGAAGAGGAAGTCCACTGTCAATTGCTTTGCTGCCATTGGCATATGAGGGAAAATATAATAAGGCACTGCAGGCTGATGGTTACTTAACTGAGAGCCAGAGACATGGCAAGTCTGGCTTTAGTTTGACAAAGCTTCTTGCCAGACTGAAAAATAGTATTCAGCTGATAGACAAACCTCATGGGCAGCATGCAGTGGTTCTGGCAGAAGATGCTCCAAAATACATGCAGAAGGGAGATTTTGGTCAGAGTATTAGTGCATCACGACAGATATATTTGACATTTCCAGCTGAAAGCACTTTCACAGAGGAAGATGTCTCAAACTATTTCAACACATTTGGGTGGGTTGAAGATGTAAGGATTCCTTGTCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTGATCCAGAAACTGTTAAAACGATTTTGGAAAAGGGGAATCCCCATTATGTTAATAGGTCTCGGGTGCTTGTGAAACCTTATCGAGAGAAAGCAAAGGTTGTTGACAGGAAGTTCCCTGATAGAATTGAGCACCCTATCTGTTATTCACCACACTATGTAGATATGGACCCAGAATATCCCTTGATTTCAAGAAGTTGTGGAAACCATAGTTCTCTAGCGACACAGGTGATGGAAGAAGATCATAAGGCCCTTCAGCAGAGGAGATGCCTTGCAGAGCTGAAATTTGCTAAAATTTCTTTGTCCAGTTCACCACAATTTAGCCTCTCCATGGATGGGTCAAGGGTTTCGGATGATGCCTTCAATTTCAAGCCTAAGCAGACAGACTCCAATTCCTCTGATGGGAACAGCAGTCAACAACTCAATCTCCCTGACAGTCCATTTGCATTTCCAATGGAAAGTGGTATTGAGGCAGTCATGTAG 1587 0.4171 MDISDYTRVVFDKIHKFEPEYAVKIIRYLQLQDNVEQEMAKLASCHDHFIREVAFKAKVVIQGLAARPVIFPISPPLNNEQGLSHLLAISPITPTSPPSFQVPSPFWNARSVRNTNPDTVKKQPQLFSLENCIEPVNTEIRGTAHDYFRLDAPAANFGVKVGRRHSRLSEFPVKTCYYFNNGYCKHGTSCRYYHGLLVSESFPHMYGSDANNEGQMFLPGSLAQLEKEIVELLKPRRGSPLSIALLPLAYEGKYNKALQADGYLTESQRHGKSGFSLTKLLARLKNSIQLIDKPHGQHAVVLAEDAPKYMQKGDFGQSISASRQIYLTFPAESTFTEEDVSNYFNTFGWVEDVRIPCQQRRMFGFVTFVDPETVKTILEKGNPHYVNRSRVLVKPYREKAKVVDRKFPDRIEHPICYSPHYVDMDPEYPLISRSCGNHSSLATQVMEEDHKALQQRRCLAELKFAKISLSSSPQFSLSMDGSRVSDDAFNFKPKQTDSNSSDGNSSQQLNLPDSPFAFPMESGIEAVM 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0042 528 ProSiteProfiles OST-type HTH domain profile. 221 305 IPR025605 -
Lal6g0042 528 SMART rrm1_1 324 394 IPR000504 GO:0003723
Lal6g0042 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 398 IPR000504 GO:0003723
Lal6g0042 528 CDD RRM_AtC3H46_like 325 394 IPR034365 -
Lal6g0042 528 Pfam OST-HTH/LOTUS domain 221 299 IPR025605 -
Lal6g0042 528 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 528 - -
Lal6g0042 528 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 528 - -
Lal6g0042 528 SUPERFAMILY RNA-binding domain, RBD 334 410 IPR035979 GO:0003676
Lal6g0042 528 MobiDBLite consensus disorder prediction 486 513 - -
Lal6g0042 528 ProSiteProfiles Zinc finger C3H1-type profile. 170 197 IPR000571 GO:0046872
Lal6g0042 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 388 IPR000504 GO:0003723
Lal6g0042 528 MobiDBLite consensus disorder prediction 486 518 - -
Lal6g0042 528 Gene3D - 326 402 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0042 Lal-Chr6 285043 289741 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0042 - - ahf:112701875 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0042 6 285043 289741 Lal6g0042 6 285043 289741 ECH
Lal18g1608 18 17542228 17546389 Lal6g0042 6 285043 289741 LSH
Lal18g1608 18 17542228 17546389 Lal6g0042 6 285043 289741 PCT
Lal6g0042 6 285043 289741 Lal18g1608 18 17542228 17546389 PCT