Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1608 ATGGATATTTCTGACTACACAAGGATTTTGTTGGACAAAATTCAGAAATTTGAGCCTGAATATGCTGGAAAGATTATAGGATATCTCCTATTACAGGACAATGGTGAGCAAGAAATGGCTAAGTTGGTTTCATACCATGACAATTTCATCCGTGAAGTAGCTTTTAAAGCGAAAATGGACCTTCAAAGTTTGGCTGCTAAACCTGTCATACTTCCAATCTCACCTCCTATCAACCCTCAACAAGGTTTGAGCCACTTTTCCGTAATCTCTCCAAGAATTCCTACTTCGCTGCCGAGCTTTCAGGTTCACTCCCCTTATTGGGATCTACATTCTGTGAACAAAACCAATCCAGAATTTATGGCAATGAATTCCTTAGATTCTATGACTAGACTTCAGAAACAGACAGAGTTGTTAAGTTTGGATAATCACTTAGACTCTGTGAATACCGAAACCGGAGGGATTGCTCATGATTATTTTGGTTTAGATGCTTCTGCTGCCAGTTTTGGTGTTAAATCTGGTAGAAGGATTTCAAGCCTGTCTGAATTTCCGGTCAAGATATGTCACTATTTCAACAAAGGTAACTGTAGGCATGGACCTAGCTGTAGATACTATCACAGTCAAGTTGTATCTGAGAGCTTCCCTCAGATATATGGAAATGATGCTACTATTGAGGATCAGATGTTTTCGCCGAGGTCACTAGCACAGTTAGAGATAGAAATTGTTGAGCTCATAAAATCAAGAAGAGGAAATCCATTGTCAATTGCAATGCTGCCAACGGCATATCAGGATAAATATAACAGGATGTTGAAATTTGATGGTTACTTAACTGAGAGCCAGAGACATGGTAAGTCTGGCTATAGTTTGACGAAGCTTCTTGTGCGACTGAAAAATAGTATTCAGCTGATAGAAAGGCCAAATGGGCAGCATGCAGTGGTTCTGGCAGAAGATGCTCCAAAATACATGCAGAAGGGAGATTTTGGTCAGAACATTAGTGCATCTCGGCAAATATATTTGACATTTCCAGCTGAAAGCACTTTCACAGAGGAGGATGTTTCAAACTACTTCAACACATTTGGGTGTGTTGAAGATGTAAGGATTCCTTGTCAGCAGAGAAGAATGTTTGGGTTTGTGACATTTGTTGATCCAGAAACTGTTAAAACAATTTTGGAAAAGGGAAATCCTCATTATGTTAGTGGCTCCCGGGTGCTTGTGAAACCTTATCGAGAGAAGACAAAGGTTGTTGACAGGAAGTTCCCAGTTAGAATTGATCACCCTGTTTGTTATTCACAACACTATGTAGTTATGAACTCGGAATTTCCCTTGAGTGAGTATGCTATTGTCGAGTTTGGAACCTATACTATAATTTTTCTTGTTAACAATTTTGATCAGCATGTAGCTTTTTCATTCCAGAATCATGTGGAAGATGAGAAGGCCTTTGACTTACAAAGGAGAGGCGCTCTTGCAGAGCTGCGATTTACTAAAAATAATTTATCCGCTTCTCCCCAATTTGGCCTCTCCATGGATGGATCAAGAGCTTCAGATGATGCCTTCAATTTCAAGCCTTCAGAGTCTTTGAGTTATTCGCCGAATGAAAAACCTAAGCAGACAGACTCCAATTCCTCTGATGAGAACAGTCAAGGACTCAATCTCCCGGACAGTCCATTTGCATTTCCAAGGGCGAGTGGGATATAG 1692 0.4025 MDISDYTRILLDKIQKFEPEYAGKIIGYLLLQDNGEQEMAKLVSYHDNFIREVAFKAKMDLQSLAAKPVILPISPPINPQQGLSHFSVISPRIPTSLPSFQVHSPYWDLHSVNKTNPEFMAMNSLDSMTRLQKQTELLSLDNHLDSVNTETGGIAHDYFGLDASAASFGVKSGRRISSLSEFPVKICHYFNKGNCRHGPSCRYYHSQVVSESFPQIYGNDATIEDQMFSPRSLAQLEIEIVELIKSRRGNPLSIAMLPTAYQDKYNRMLKFDGYLTESQRHGKSGYSLTKLLVRLKNSIQLIERPNGQHAVVLAEDAPKYMQKGDFGQNISASRQIYLTFPAESTFTEEDVSNYFNTFGCVEDVRIPCQQRRMFGFVTFVDPETVKTILEKGNPHYVSGSRVLVKPYREKTKVVDRKFPVRIDHPVCYSQHYVVMNSEFPLSEYAIVEFGTYTIIFLVNNFDQHVAFSFQNHVEDEKAFDLQRRGALAELRFTKNNLSASPQFGLSMDGSRASDDAFNFKPSESLSYSPNEKPKQTDSNSSDENSQGLNLPDSPFAFPRASGI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1608 563 Gene3D - 178 235 - -
Lal18g1608 563 SUPERFAMILY CCCH zinc finger 183 206 IPR036855 GO:0046872
Lal18g1608 563 Gene3D - 336 413 IPR012677 -
Lal18g1608 563 SMART c3hfinal6 181 207 IPR000571 GO:0046872
Lal18g1608 563 SUPERFAMILY RNA-binding domain, RBD 345 416 IPR035979 GO:0003676
Lal18g1608 563 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Lal18g1608 563 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 185 207 IPR000571 GO:0046872
Lal18g1608 563 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 561 - -
Lal18g1608 563 SMART rrm1_1 335 405 IPR000504 GO:0003723
Lal18g1608 563 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 561 - -
Lal18g1608 563 CDD RRM_AtC3H46_like 336 405 IPR034365 -
Lal18g1608 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 409 IPR000504 GO:0003723
Lal18g1608 563 MobiDBLite consensus disorder prediction 517 563 - -
Lal18g1608 563 Pfam OST-HTH/LOTUS domain 232 310 IPR025605 -
Lal18g1608 563 MobiDBLite consensus disorder prediction 517 551 - -
Lal18g1608 563 ProSiteProfiles OST-type HTH domain profile. 232 315 IPR025605 -
Lal18g1608 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 400 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1608 Lal-Chr18 17542228 17546389 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1608 - - lang:109342110 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1608 18 17542228 17546389 Lal18g1608 18 17542228 17546389 ECH
Lal18g1608 18 17542228 17546389 Lal6g0042 6 285043 289741 LSH
Lal18g1608 18 17542228 17546389 Lal18g1608 18 17542228 17546389 PCT
Lal18g1608 18 17542228 17546389 Lal6g0042 6 285043 289741 PCT
Lal6g0042 6 285043 289741 Lal18g1608 18 17542228 17546389 PCT