Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1201 ATGTCTCTGCTCTCAGATCTTATCAACCTTAACATCTCCGAAACAACAGAGAAGGTTATAGCTGAGTACATATGGATTGGTGGATCAGGATTGGACCTGAGGAGCAAAGCAAGGACTCTACCAGGACCAGTTAGTGACCCTTCAGAGTTGCCCAAATGGAATTATGATGGTTCCAGCACAGGTCAAGCCCCTGGAGAAGATAGTGAAGTGATCATATATCCTCAAGCTATTTTCAAGGATCCATTCAGAAAGGGTAACAATATCCTGGTTATATGTGATGCTTACACTCCTGCTGGAGAACCCATTCCTACTAACAAGAGACATGCTGCTGCCAAGATTTTCAGCAATCCTGATGTTGTTGCTGAGGAACCATGGTATGGCATTGAGCAGGAATATACCTTGTTGCAGAATCATGTTCAATGGCCTCTTGGTTGGCCTGTTGGTGGTTTTCCTGCACCCCAGGGACCATACTATTGTGCTATTGGTGCTGACAAAGCTTATGGTCGTGAAATTGTTGACTCACATTACAAAGCGTGTCTCTATGCTGGCATTAATGTTAGCGGAATTAATGGGGAAGTTATGCCCGGCCAGTGGGAATTCCAAGTTGGTCCCTCTGTTGGAATCTCTGCTAGTGATGAAATATGGGTTGCTCGTTACATTTTGGAGAGAATCACTGAGATTGCTAGTGTTGTGGTTTCCTTTGACCCTAAGCCAATTAAGGGTGATTGGAATGGTGCTGGTGCTCACACAAATTACAGCACCAAGTCTATGAGAAATGATGGTGGCTATGAAATAATCAAACAAGCCATTGATAAATTGGGAAAGAGGCATAAGGAGCACATTGCTGCTTATGGAGAAGGCAATGAGCGTCGTTTAACTGGAAAACATGAAACAGCTGATATCAACACCTTCAAATGGGGAGTTGCAAATCGTGGTGCTTCCATTAGAGTTGGAAGGGAGACAGAGAAAGAAGGGAAGGGATATTTTGAGGATAGAAGGCCAGCTTCTAACATGGACCCATATGTGGTCACTTCAATGATTGCTGAAACCACCATTCTCTGGAAACCATGA 1071 0.4398 MSLLSDLINLNISETTEKVIAEYIWIGGSGLDLRSKARTLPGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRKGNNILVICDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQNHVQWPLGWPVGGFPAPQGPYYCAIGADKAYGREIVDSHYKACLYAGINVSGINGEVMPGQWEFQVGPSVGISASDEIWVARYILERITEIASVVVSFDPKPIKGDWNGAGAHTNYSTKSMRNDGGYEIIKQAIDKLGKRHKEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRETEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1201 356 MobiDBLite consensus disorder prediction 40 66 - -
Lal5g1201 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Lal5g1201 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lal5g1201 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Lal5g1201 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 14 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lal5g1201 356 PANTHER GLUTAMINE SYNTHETASE 1 354 - -
Lal5g1201 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Lal5g1201 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 352 IPR014746 GO:0003824
Lal5g1201 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
Lal5g1201 356 Pfam Glutamine synthetase, beta-Grasp domain 23 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lal5g1201 356 PANTHER GLUTAMINE SYNTHETASE 1 354 - -
Lal5g1201 356 Pfam Glutamine synthetase, catalytic domain 152 254 IPR008146 GO:0004356|GO:0006807
Lal5g1201 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Lal5g1201 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1201 Lal-Chr5 14810039 14814835 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1201 K01915 - gmx:548082 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0522 3 3805197 3809702 Lal5g1201 5 14810039 14814835 LSH
Lal5g1201 5 14810039 14814835 Lal22g0285 22 1815742 1819159 PCT