Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1179 ATGGATCACAGCTCTGACGAGGATACTGATATTAGTGAATCTGAAATAAGTGACTATGAAGACAAGTCTTATGAGAAACTGAAAAATGGAAGTCACTGTGTGAAAACCTCAGACGAGACTTTCACCTGTCCATACTGCCCTAAAAAGAGAAAACGGGATTATATGTACAAGGAGCTCCTTCAACATGCTTCTGGGGTGGGCCAGAGTAGTTCACAAAAGAGAAGGGCTATTGACAAGGCTAACCATTTGGCTTTAGTGAAATATTTGGAAAAAGATCTTATGAAAGTTGATGTTCCGCCAAAACCTGCAGAGGAAAGTGACTCTTCTGTTAATCCTAATGAACAGTTTGTGTGGCCTTGGATTGGAATTGTTGTGAATATCCCCACTAGAAGGGCAGGAGATGGACGCTGTGTTGGGGAAAGTGGTTCGAAATTGAGAGATGAGTACAAACGCAGGGGGTTTAATCCTTTTAGAGTTAGTCCTTTATGGAATTTCCGAGGTCACACTGGAACTGCTCTTGTAGAATTTAATAAAAATTGGCCAGGCTTCCATAATGCATTGGCATTTGAAAAAGCATATGAATCGGATCATCATGGAAAAAAGGATTGGTTTGCTAATCCAGAGGAGAAGTCTGGTCTTTATGCATGGGTTGCCCGAGCAGATGACTACAAAATGAACAATATCGTTGGAGAAAACCTGAGAAAGATGGGTGATGTGAAAACTGTATCTGAACTGCAGGAAGAAGAAGATCGAAAGCAGCATAAACTAGTGTCAAATTTGCATAACATTATACAGGCCAAGAACCAGCATTTAAAAGAGATAGAAGTAAGATGCAATGAGACTACACAGAAAATGGACGTTGCAATGGGGGAAAAAGATAAGCTCATTCATGCTTATAATGAAGAGATAAAGAAAATACAGTCAAATGCTAGGGATCACTTCCAGAGGATTTTTAATGATCACGAAAAGCTTAAGATGCAACTGGAAACCCATAAAAGTGACCTCGAGTTGCGGAAAATTGAATTGGAAAAGCGTGAGGCACATAATGAAAGTGAAAGAAAGAAGTTGGCAGAAGAGATGGAGGAGAATGCAGTGAAAAATAGCTCTCTTCAGATGGCTTCTATGGAGCAACAGAAAGCTGATGAAAATATTTTGAAACTAGCTGAAGATCAAAAGAGGCAAAAAGAAGATCTCCATGCTAAAATCCTTCGGCTCGAAAAAGACCTGGATATGAAACAAAAGCTAGAGCTGGAGATTGAACAACTACAAGGAAAACTAAATGTGTTGAAGCACATGAAAGATGATGATGAAGATGCAGAAATTCTGAATAAAGTAGATACTTTAATGAAGGAATTAAGAGAAAAGGAAGAAGCCTTTCAAGACTTAGATGAAATGAATAACGCGTTAATCGCGAAACAACGTAAGAGTAATGATGAACTGCAAGATGCTCGAAACGAATTACTTAATTTCATTAAAGAAATACCAAGTGGCGGAAATATTGGTGTAAAGAGAATGGGGGAACTCGACACGAGACCATTCCTTGAAGCTACGAGGAAAAAATATAATGAGGAGGAAGTTGAAGAGAGAACTTCAGAACTGTGTTCGTTGTGGGAAGAGTATCTTAAGGATCCAGATTGGCATCCATTCAAAGTTATCATGGTTGATGGGAAAGAAACGGAAATTATAAGAGATGATGATGAGAAACTGACTGGGCTGAGAAGTGAGATCGGTGAAGGGGCGTATAATGCAGTTGTGACAGCTCTGAAAGAGATAAATGAATATAATCCTAGTGGGCGTTATATATCCTCACAAGTATGGAACTACGGACAAGGAAGGGTGGCAACTTTGCAAGAGGGAGTGCAAGTTCTTCTGAAGCAATGGAAATCATATAAACGGAAGCGGGGAATGATGTGA 1914 0.395 MDHSSDEDTDISESEISDYEDKSYEKLKNGSHCVKTSDETFTCPYCPKKRKRDYMYKELLQHASGVGQSSSQKRRAIDKANHLALVKYLEKDLMKVDVPPKPAEESDSSVNPNEQFVWPWIGIVVNIPTRRAGDGRCVGESGSKLRDEYKRRGFNPFRVSPLWNFRGHTGTALVEFNKNWPGFHNALAFEKAYESDHHGKKDWFANPEEKSGLYAWVARADDYKMNNIVGENLRKMGDVKTVSELQEEEDRKQHKLVSNLHNIIQAKNQHLKEIEVRCNETTQKMDVAMGEKDKLIHAYNEEIKKIQSNARDHFQRIFNDHEKLKMQLETHKSDLELRKIELEKREAHNESERKKLAEEMEENAVKNSSLQMASMEQQKADENILKLAEDQKRQKEDLHAKILRLEKDLDMKQKLELEIEQLQGKLNVLKHMKDDDEDAEILNKVDTLMKELREKEEAFQDLDEMNNALIAKQRKSNDELQDARNELLNFIKEIPSGGNIGVKRMGELDTRPFLEATRKKYNEEEVEERTSELCSLWEEYLKDPDWHPFKVIMVDGKETEIIRDDDEKLTGLRSEIGEGAYNAVVTALKEINEYNPSGRYISSQVWNYGQGRVATLQEGVQVLLKQWKSYKRKRGMM 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1179 637 Coils Coil 264 284 - -
Lal5g1179 637 Gene3D XS domain 109 279 IPR038588 -
Lal5g1179 637 Pfam XS zinc finger domain 43 86 IPR005381 GO:0031047
Lal5g1179 637 CDD RRM_like_XS 116 223 IPR005380 GO:0031047
Lal5g1179 637 Pfam XH domain 503 633 IPR005379 -
Lal5g1179 637 Coils Coil 325 362 - -
Lal5g1179 637 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 49 - -
Lal5g1179 637 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 49 637 - -
Lal5g1179 637 Pfam XS domain 114 224 IPR005380 GO:0031047
Lal5g1179 637 MobiDBLite consensus disorder prediction 1 28 - -
Lal5g1179 637 Coils Coil 445 493 - -
Lal5g1179 637 PANTHER RIBONUCLEASE P SUBUNIT P38 49 637 IPR045177 GO:0080188
Lal5g1179 637 PANTHER RIBONUCLEASE P SUBUNIT P38 1 49 IPR045177 GO:0080188
Lal5g1179 637 Coils Coil 388 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1179 Lal-Chr5 14563297 14571652 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1179 - - gmx:102665742 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1179 5 14563297 14571652 Lal5g1179 5 14563297 14571652 ECH
Lal5g1179 5 14563297 14571652 Lal22g0271 22 1731206 1739625 PCT
Lal22g0271 22 1731206 1739625 Lal5g1179 5 14563297 14571652 PCT