Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0271 ATGTCAATGGTTGTTTCAACGCACTCACTCACTCCCACCGCTGTATTTGTTCATACTTTGTCTCCTCTAAAGTATCCAGTTCCGTATTTCAAGGCAATACTAACTAATATCTGTCTTTCAGGTTCCATAATGTTAAGCGTAGGTGAAACAGTAATGAATCACCACTCTAGCAAGGATACTGATACAAGTGCACCTCAGGTAAACTGGTGGTATGTAGATGAATCTTATGAAGAACTCAAAAAGGGAAACCACAATGTGAGAATCTCAGATGAGACATTCACTTGCCCGTACTGCCCTAGAAGAAAACAGGATTATGTGTACAGGGAACTCCTTGAACATGCTTCTGGGGTGGGTCGTAGTAGTTCACTGAAGAAAAGTGCCAGAGAAAGGGCTAATCATCTAGCTTTAGTGAAATATTTGGAAAAAGATCTTATTAGCATGGAAGGCCCTATCCCATTTAAACCTCTAGATAAAGGTATCATAATATTAAGCTCAGAAGAAACGGTAAAAGCTCATAGCTCTAACATGGATACTGATAGAAGTGCATCTCAATCCCAAATAAGTGGGTTGTATGTGAAGAAATTTTATAAACAACTCAAAACGGGAAGTCTCAACGTGAAAACCTCAGATGAAACATTCGCTTGTCCATTCTGCCCTAAAAAGATAAAGCAGGACTACGTGTACAGGGAAATCCTTGCACATGCTTCTGGGGTTGGTCAAAGTAATTCACTAAAGAGAAGTCACTGGGAAAAGGCTTCTCATCTGGCTTTAATGAAATATTTGGAAAAGGATCTTATGAATGTTGATGGTCCATCAAAACCTGTAGATAAAGGTACAACAATATCAAGCCCACCAGAAACTGTAGTAGGTCACTGCTCTGACAAAGATACTGGTATAAATGCATCTCAAATAATCTGGAGGTCTGTACGTAAATCTTATGAAGAACTCAGAAAGGGAAGCCACACTGTGAAAACCTCTGATTTGACTTTCACGTGTCCATACTGCCCTAAAAGGATAAAACGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCAGGGGTGGGTTACAGTAGTTCACAAAAGAGAAGTGCCACTGAAAAGGCCAATCATATAGCTTTAGTGAAATATTTGAAAAAGGATCTCATGAACGCGGATGGTCCATCAAAACCTATAGATAAAGGTGATCCCCCTGTTACTAAAGCAGTTATAACATTTTTTTTTGTTCAAGTGAGCTTTACCCCCAGTACCATAATAACACGCGCAGGTGATACTGTCATGGGTCACTGCTCTGTCATGTATACTAATACAAGTGCAAATCGAATAAGTGTAAATCATGTGGATAAATGCTATGAAGAACTTAAAAAGGGAAGTCTCAATGTGAGAACCTCAGATGAGACTTTCACATGTCCGTACTGCCCTAAAAAGAGAAAACGAGAGTATGTGTTCAGGGAAATCCTTGAACATGCTTCTGGGGTTGGTCAGAGTAGCTCACAAAAGAGAAGTGCCACTGAAAAGGCTAATCATATGGCTTTAGTGAAATATTTGAAAAAGGATCTTATGGATGTGGGTGGTCCATCAAAACGTAGGTATGAAGGCACTCCTTTTTATTCTGATGACCAGTTAGTTTGGCCTTGGACTGGGATTGTGGTTAATATTCCCACTAAACAGTCAGAGATTGGACGTTGTGTTGGTAAAAGTGGTTCCAAGCTGAGGGATGAGTACAGAGTTAGGGGTTTTAATCCACATAGAGTCCGCCCTCTTTGGGATCTCCAGGGTCACTCTGGAGTAGCACTTGTAGAATTCGATAAAAATTGGTCAGGGTTGGATAAGGCATTGAAATTTGAAAAAGCATATGAATCAGATCATCATGGGAAAATGGACTGGTTTTCTAATACTATTCAGAAGTCTGGTCTTTATGCTTGGATTGCCCGAGCAGATGACTACAACATGAACAATATCATCGGGGAACAACTGCAGAAGATGGGAGATCTCAAAACAATATCTGAACTTATGGAAGGAGAAGCTCGAATGCATGATAAACTTGTGTCCTGTCTGAAAAACACTATTCAGGTCAAGAACAGTCACTTAAAGGATATGGAAATGAGATATAATGAGACTACACTTCGCGTGGACACTGTAATGGGGGAAATAGACAAGCTTACTCAATCTCATAATCAAGAAATGAAGAAAATACAGTCAAGTGCAAGGCAATACGTTCAGAGTATTTTTAACAGTCATGAAAGGCATAAGTTGCAACTGGAGTCTCAGAACAGCATGCTTGAGTTGCGGAGAATTGAATTGGAAAAACGTGAGGCACATAATGAAATTCAGAGGAAAAAGTTGCTAGAAGAGATTGATGAGAATGCAAACAGCTCTCTTCAAATGGCTGTTCTGGAGCACCATAAAGCTAAGGAAAATGTTTTTAAATTGGCTGCTGATCAAAAGCGGCAAAAAGAGCAACTCCATGCTAAAATCATCCAGCTTGAAAAACAATTGGATATGAAACAAAAACTGGAAATGGAGATTCTACAACTAAAAGGCAAATTAAATGCCATGAAGCACATGCAAGATGACGGAGATTTAGAGGTTCTGAATAAGTTGGACGCTTTACAGAAGGATTTAAGAGAAAAGGAACAGTCGCTTCAAGAGTTAGATGCATTGAATCAGACACTGATCGTTAAAGAGCGTAAGAGTAATGATGAGCTGCAGGAAGCTCGAAAAGAATTGATTAACAGCATTAAAGATATGTCTATTCGTGCCACTGCCAATATTGGTGTGAAGAGAATGGGGGAACTTGATACTAGACCATTTGTTGAAACTATGAAGAAAACATATAATGAGGAGGACGTAGAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGGAAGAGTACCTAAAAGACCCTGACTGGCATCCATTTAAAATTACATTGATTAATGGGAAACATCAGGAAATCATAGATGATGAAGATGAAAAGCTGAAGGGACTGAAAAACGAGATGGGCGATGGAGTGTACAAAGCTGTCGTTGCAGCATTGAGAGAGATAAATGAATATAATCCAAGTGGACGCTATATATTCTCAGAATTATGGAACTATGAAGAAGGAAGGAAAGCAACTTTGCAAGAAGGAGTGCAAGTTCTGTTGAAGCAATGGAAAGTGCAGAAACGTGAGAAGTGA 3180 0.395 MSMVVSTHSLTPTAVFVHTLSPLKYPVPYFKAILTNICLSGSIMLSVGETVMNHHSSKDTDTSAPQVNWWYVDESYEELKKGNHNVRISDETFTCPYCPRRKQDYVYRELLEHASGVGRSSSLKKSARERANHLALVKYLEKDLISMEGPIPFKPLDKGIIILSSEETVKAHSSNMDTDRSASQSQISGLYVKKFYKQLKTGSLNVKTSDETFACPFCPKKIKQDYVYREILAHASGVGQSNSLKRSHWEKASHLALMKYLEKDLMNVDGPSKPVDKGTTISSPPETVVGHCSDKDTGINASQIIWRSVRKSYEELRKGSHTVKTSDLTFTCPYCPKRIKRDYVYREILEHASGVGYSSSQKRSATEKANHIALVKYLKKDLMNADGPSKPIDKGDPPVTKAVITFFFVQVSFTPSTIITRAGDTVMGHCSVMYTNTSANRISVNHVDKCYEELKKGSLNVRTSDETFTCPYCPKKRKREYVFREILEHASGVGQSSSQKRSATEKANHMALVKYLKKDLMDVGGPSKRRYEGTPFYSDDQLVWPWTGIVVNIPTKQSEIGRCVGKSGSKLRDEYRVRGFNPHRVRPLWDLQGHSGVALVEFDKNWSGLDKALKFEKAYESDHHGKMDWFSNTIQKSGLYAWIARADDYNMNNIIGEQLQKMGDLKTISELMEGEARMHDKLVSCLKNTIQVKNSHLKDMEMRYNETTLRVDTVMGEIDKLTQSHNQEMKKIQSSARQYVQSIFNSHERHKLQLESQNSMLELRRIELEKREAHNEIQRKKLLEEIDENANSSLQMAVLEHHKAKENVFKLAADQKRQKEQLHAKIIQLEKQLDMKQKLEMEILQLKGKLNAMKHMQDDGDLEVLNKLDALQKDLREKEQSLQELDALNQTLIVKERKSNDELQEARKELINSIKDMSIRATANIGVKRMGELDTRPFVETMKKTYNEEDVEERASELCSLWEEYLKDPDWHPFKITLINGKHQEIIDDEDEKLKGLKNEMGDGVYKAVVAALREINEYNPSGRYIFSELWNYEEGRKATLQEGVQVLLKQWKVQKREK 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0271 1059 Coils Coil 980 1000 - -
Lal22g0271 1059 Pfam XH domain 928 1057 IPR005379 -
Lal22g0271 1059 Coils Coil 812 856 - -
Lal22g0271 1059 CDD RRM_like_XS 542 649 IPR005380 GO:0031047
Lal22g0271 1059 Pfam XS zinc finger domain 470 513 IPR005381 GO:0031047
Lal22g0271 1059 Pfam XS zinc finger domain 215 257 IPR005381 GO:0031047
Lal22g0271 1059 Pfam XS zinc finger domain 95 137 IPR005381 GO:0031047
Lal22g0271 1059 Pfam XS zinc finger domain 332 375 IPR005381 GO:0031047
Lal22g0271 1059 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 100 159 - -
Lal22g0271 1059 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 290 339 - -
Lal22g0271 1059 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 340 400 - -
Lal22g0271 1059 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 52 101 - -
Lal22g0271 1059 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 171 221 - -
Lal22g0271 1059 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 223 278 - -
Lal22g0271 1059 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 427 476 - -
Lal22g0271 1059 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 476 1057 - -
Lal22g0271 1059 Coils Coil 865 920 - -
Lal22g0271 1059 PANTHER RIBONUCLEASE P SUBUNIT P38 171 221 IPR045177 GO:0080188
Lal22g0271 1059 PANTHER RIBONUCLEASE P SUBUNIT P38 290 339 IPR045177 GO:0080188
Lal22g0271 1059 PANTHER RIBONUCLEASE P SUBUNIT P38 427 476 IPR045177 GO:0080188
Lal22g0271 1059 PANTHER RIBONUCLEASE P SUBUNIT P38 223 278 IPR045177 GO:0080188
Lal22g0271 1059 PANTHER RIBONUCLEASE P SUBUNIT P38 100 159 IPR045177 GO:0080188
Lal22g0271 1059 PANTHER RIBONUCLEASE P SUBUNIT P38 340 400 IPR045177 GO:0080188
Lal22g0271 1059 PANTHER RIBONUCLEASE P SUBUNIT P38 52 101 IPR045177 GO:0080188
Lal22g0271 1059 PANTHER RIBONUCLEASE P SUBUNIT P38 476 1057 IPR045177 GO:0080188
Lal22g0271 1059 Gene3D XS domain 536 704 IPR038588 -
Lal22g0271 1059 MobiDBLite consensus disorder prediction 273 293 - -
Lal22g0271 1059 Pfam XS domain 539 650 IPR005380 GO:0031047
Lal22g0271 1059 Coils Coil 751 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0271 Lal-Chr22 1731206 1739625 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0271 - - gmx:100790814 1338.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0271 22 1731206 1739625 Lal22g0271 22 1731206 1739625 ECH
Lal5g1179 5 14563297 14571652 Lal22g0271 22 1731206 1739625 PCT
Lal22g0271 22 1731206 1739625 Lal5g1179 5 14563297 14571652 PCT