Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1171 ATGAGAGATCAACCGATGACCAGAGCAGATCTTCAGGGTATTACCACTGCTTTTACCACGACCCTAACTGCTTTGATTGAACAGTTGGTGACTTTACGAAATCAGGCAATTCAAGTTTTGAAGAAGAAGGACCGAGTCAGGAATAGATGGTTGACCACCCCTGTGAAAGTTGATATTCCATTGTTCTATGGAACTATGGGAGTTGAAGATTATTGGGGAATGGGTTCAAATCTGGAACCAGTGCCAATTACACCCCAAAAACATGACCCAGCATGGAAGCATGTTCAAATGTTTAAGAATGGGGAAAAGGTGATGTTGAAATGCATATATTGTCTTAAGATGTTCAAGGGTGGTGGGATTCATAGGATTAAGGAACATCTTGCTTGTCAGAAAGGTAATGCATCCACTTGTTGTAGGGTACCCCATGATGTTAGGCTTAGTATGCAGCAGAGTTTGGATGGGGTTGTGGTGAAAAAGAGGAAGAAACAAAGATTTGAGGAAGAGATTATGAATGTTGCTCCTTTAGCTACTGCAGTTCATAGCACTATTGCCAACCAGGTTGATGTTAGTGAAGGATTTCAATCCATTGGAATACAGAATTCAGTGGAACATAATTCTAATATGTTACTGAATCATATTGAAGGAGTTAGTAAAGGTGTAGAAAGAAGGAAGAAGTTGAGAGCCAGCAAGAATTATACAAAGTCTGATGCTGCTACCGAGAAAAACGCAGTGTTCCTGAAGAAGCTGGACAGTCGCATTCACATGACAATAGGTCGGTTTTTGTATGATATTGGTGCACCTTTTGATGCTGTCAACTCAATCTATTTTCAGGAAATGGTTGAAGCAATTGCTTCGGGAGGTTCTGGAATTGAACGTCCCTCACGTCAAGAAATTCGGGGTTGGGTCCTGAGAAACTCTGTTGAAGAAGTGAAGAATGATATAGATAGATGCAAGATGACATGGGGGAGGACTGGCTGTTCTATTTTGGTTGACCAGTGGAGTACAGACTCAGGTAGAACACTGCTATGTTTTTTGGCGTATTGTCCCGAAGGAATAGTCTTTTTGAAATCACTGGATGCAACCGAGATTATGGCTTCCTCGGAATATTTATTTGAGTTGATAAAACAAGTAGTAGAAGAAGTTGGAGTTGGGCAAGTGCTGCAAGTCATTACATCTGGTGAAGAACAATATGCTGCTGCTGGGAGACAGCTGACAGATACTTTTCCTACCCTTTATTGGAGCCCTTCTGCAGCTCATTGCATTGATTTGATACTTGAAGATATTGGAAATCTCGAGTGGATTGGTGCAGTTATTGAACAAGCTAGATCTATAACAAGATTTGTCTACAACCATAGTGCAGTATTGAATATGGTTAGAAGGTATACATTAGGGAATGATATTGTGGATCCTTCTATCTCACGCTTTGCTACAAACTTCACCTCATTGAAGCGAATGGTTGATCTTAAACACAATTTACAGGCTATGGTCACTTCTCAGGAGTGGATGGATTGTCCATATTCAAAGAAAACAGCAGGTCTGGAAATGTTAGACTGCTTAAGTAATCAAACATTTTGGTCTTCATGTGAAATGATAGTTCGTCTAACAGCTCCTCTCTTGCGCGTTCTGAGAATAGCTGCTAGTGAGATGAGACCTGCAATGGGATATATCTATGCTGGAATGTATAGGGCAAAAGAAGCAATTAAGAGAGAACTTGTTAAGAGGGAGGATTATACAGTGTACTGGAATATTATACATCACAGATGGGAAAGGCTGTGGTATCATCCTCTTCATGCTGCAGGCTTCTTCCTTAATCCAAAGTTTTTTTATAGTATTCAAGGGGATATGCACAACGAAATTCTCTCCGGGATGTTTGATTGCATAGAGAGATTGGTACCTGATACAAGAGTCCAAGATAAAATTACCAAAGAGATAAACTTATACAAGACAGCTGCAGGAGATTTTGGGAGAAAGATGGCAGTAAGAGCAAGAGATAACCTGCTTCCTTCTGAGTGGTGGTCCACTTATGGAGGAGGCTGCCCTAACTTATCGCGTTTAGCAATTCGTATTCTAAGTCAAACATGCAGTGTGGTATCTTGCAAGAGAAACCAAATTCCTTTTGAACAAACAATGAATACACGGAATCATATAGAGCGCCAACATCTTACCGATCTTGTCTTTGTTCATTACAACTTACGATTAAGACAAATGTTTATGAATAAAGAACAAAACTTTAGCGATCCCCTATCATTTGATCATGTTGGTAATGTTGACGAGTGGATCAGGGCAAAGGATTTATACGAAGAAGAATACGGCTCGAATTGGACGACGCTGGATCCGGCTTCTGTAAACACAATGCTTTTAAGGCCTTTAAATGATGAAGCTGAAGAATTGGGTGAAGGGTTTGATGATCATGAAATTTTCAGTTGTATGAAAGACGGCGACGGAGAAAATGGTGGTAAACCATTAACCATTGATCAAAGTAACCATGTTTTTGTATCTGAAACATGA 2508 0.4015 MRDQPMTRADLQGITTAFTTTLTALIEQLVTLRNQAIQVLKKKDRVRNRWLTTPVKVDIPLFYGTMGVEDYWGMGSNLEPVPITPQKHDPAWKHVQMFKNGEKVMLKCIYCLKMFKGGGIHRIKEHLACQKGNASTCCRVPHDVRLSMQQSLDGVVVKKRKKQRFEEEIMNVAPLATAVHSTIANQVDVSEGFQSIGIQNSVEHNSNMLLNHIEGVSKGVERRKKLRASKNYTKSDAATEKNAVFLKKLDSRIHMTIGRFLYDIGAPFDAVNSIYFQEMVEAIASGGSGIERPSRQEIRGWVLRNSVEEVKNDIDRCKMTWGRTGCSILVDQWSTDSGRTLLCFLAYCPEGIVFLKSLDATEIMASSEYLFELIKQVVEEVGVGQVLQVITSGEEQYAAAGRQLTDTFPTLYWSPSAAHCIDLILEDIGNLEWIGAVIEQARSITRFVYNHSAVLNMVRRYTLGNDIVDPSISRFATNFTSLKRMVDLKHNLQAMVTSQEWMDCPYSKKTAGLEMLDCLSNQTFWSSCEMIVRLTAPLLRVLRIAASEMRPAMGYIYAGMYRAKEAIKRELVKREDYTVYWNIIHHRWERLWYHPLHAAGFFLNPKFFYSIQGDMHNEILSGMFDCIERLVPDTRVQDKITKEINLYKTAAGDFGRKMAVRARDNLLPSEWWSTYGGGCPNLSRLAIRILSQTCSVVSCKRNQIPFEQTMNTRNHIERQHLTDLVFVHYNLRLRQMFMNKEQNFSDPLSFDHVGNVDEWIRAKDLYEEEYGSNWTTLDPASVNTMLLRPLNDEAEELGEGFDDHEIFSCMKDGDGENGGKPLTIDQSNHVFVSET 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1171 835 PANTHER OSJNBA0013A04.12 PROTEIN 64 798 - -
Lal5g1171 835 Pfam hAT family C-terminal dimerisation region 659 731 IPR008906 GO:0046983
Lal5g1171 835 ProSiteProfiles Zinc finger BED-type profile. 86 144 IPR003656 GO:0003677
Lal5g1171 835 SUPERFAMILY Ribonuclease H-like 325 733 IPR012337 -
Lal5g1171 835 Pfam Protein of unknown function (DUF 659) 293 444 IPR007021 -
Lal5g1171 835 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 64 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1171 Lal-Chr5 14431841 14436269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1171 - - aprc:113850304 1276.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1171 5 14431841 14436269 Lal5g1171 5 14431841 14436269 ECH
Lal3g0544 3 4053103 4057669 Lal5g1171 5 14431841 14436269 LSH