Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1164 ATGACTGAATATACTATGCTGGAAACTGTTATGAAGGATATACTTCGTGTGGTCACACCTGTACAAGAAGATTGGGAAATACGTTTTGCGATTATTAATGATTTACGAAGAATTGTTGAATCTGTGGAAAGCCTGAGAGGTGCAACTGTTGAGCCATATGGATCATTTGTGTCTAATCTCTTCACACGATGGGGTGACTTGGATATTTCAGTTGAGTTACTAAATGGTTCACATATTGCGGCCACTGGGAGAAAACAAAAACAAGTGCTATTGGGGGATCTTTTAAAAGTTTTGAGAAAGAATGGTGGATGGAGTAGGGTGCAGTTCATCTTCAATGCACGAATTCCCATTTTAAAACTTCAAAACAACAGACAGAGTATATCTTGTGATATTTCACTTAATAACCTGGAGGCCCAAATGAAATCCAAGATTTTACTCTGGATTAACAAGATAGATGGCCGCTTTCGCGATATGGTGTTAGTGGTTAAGGAATGGGCCAAAGCACAGAAAATCAATGATTCTAGAACTGGAACTTTCAACTCCTATTCCCTTAGTTTACTTGTAATCTTTCACTTTCAGACATGTGTTCCTGCAATTTTGCCACCACTTAAAGAGATATACCCTACCAATATGGCCGATGATCTTATAGGTGTTAAAGTGGACATAGAGAATCTTATTGCGGAAACATTTGATGCTAACATAAACTGGTTCATATCAGACAAGTCCAGATCAATTAACAGAAAATCTGTGCCTGAACTTTTTGTGGAATTCCTAAAAAAGTTCGGTCAGATGAATTCATGGGCTTCAGATCTGGGCATTTCCCCATATACTGGACAATGGGAACAGATAAAGAACAACACAAGATGGTTGCCCAAGACTTATGCACTATTTGTAATCCTCTGCTCACTTAAACAACATCTTGTTTCTTTGGTAGTTGAGGATCCTTTTGAGCAGCCACAAAATACTGCACGGTCGGTCAGCCAAGGAAAATTGGCGAAGATAAACCATGCATTTGTGAATACATACAACTTACTTACCTCAAAGAATCTGAAGCAAAGTTCTCTCCTGACCCACTTAGCACCACCAGAGGTGGCAATGTTTATTGCTAAACCTGTTATACCAAATGACAATGGTGGTTACTACCATCACCCAACTCAGCCTCAGGTGCAGAAAGCCCGGCGTCCACACACACATCCACGCCCATGCCCACACCCAAACCCACCGTCACACCCACAACCGAAGCCACAGGTGAAACCACAGGTGAAGCCACAGGTGAAGCCACAGGTGAAGCCACAGGTGAAGCCACAGGTGCAGCCACAGGTGCCGCCACAGCCCCCGCTACAGCCCCAGCCACAGCGTCGTTCTCAAAATGTCAGTCGAGGGATAAGCTCCAAATGTTCGGCCTCGAAAGCACCTGTGCAGCAGGCACATCAAGGGCAGCAGATATGGAGGCAAAAGACCCAATAG 1467 0.4335 MTEYTMLETVMKDILRVVTPVQEDWEIRFAIINDLRRIVESVESLRGATVEPYGSFVSNLFTRWGDLDISVELLNGSHIAATGRKQKQVLLGDLLKVLRKNGGWSRVQFIFNARIPILKLQNNRQSISCDISLNNLEAQMKSKILLWINKIDGRFRDMVLVVKEWAKAQKINDSRTGTFNSYSLSLLVIFHFQTCVPAILPPLKEIYPTNMADDLIGVKVDIENLIAETFDANINWFISDKSRSINRKSVPELFVEFLKKFGQMNSWASDLGISPYTGQWEQIKNNTRWLPKTYALFVILCSLKQHLVSLVVEDPFEQPQNTARSVSQGKLAKINHAFVNTYNLLTSKNLKQSSLLTHLAPPEVAMFIAKPVIPNDNGGYYHHPTQPQVQKARRPHTHPRPCPHPNPPSHPQPKPQVKPQVKPQVKPQVKPQVKPQVQPQVPPQPPLQPQPQRRSQNVSRGISSKCSASKAPVQQAHQGQQIWRQKTQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1164 488 Gene3D Beta Polymerase, domain 2 31 151 IPR043519 -
Lal5g1164 488 SUPERFAMILY PAP/OAS1 substrate-binding domain 154 352 - -
Lal5g1164 488 MobiDBLite consensus disorder prediction 401 420 - -
Lal5g1164 488 SUPERFAMILY Nucleotidyltransferase 4 147 IPR043519 -
Lal5g1164 488 PANTHER PROTEIN HESO1 1 470 - -
Lal5g1164 488 MobiDBLite consensus disorder prediction 451 488 - -
Lal5g1164 488 Gene3D - 152 343 - -
Lal5g1164 488 CDD NT_PAP_TUTase 27 148 - -
Lal5g1164 488 MobiDBLite consensus disorder prediction 378 488 - -
Lal5g1164 488 MobiDBLite consensus disorder prediction 436 450 - -
Lal5g1164 488 PANTHER POLY A POLYMERASE CID PAP -RELATED 1 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1164 Lal-Chr5 14352369 14361252 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1164 - - ccaj:109788017 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1164 5 14352369 14361252 Lal5g1164 5 14352369 14361252 ECH
Lal3g0553 3 4170564 4177745 Lal5g1164 5 14352369 14361252 LSH