Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0553 ATGAGTGCATATAGTATGCTGGATATTGTTATGAAAGATATACTTCAGGTGGTCACACCTGTACAAGAAGATTGGGAAGTACGTTTTGCGATTATTAATGATTTGCGAAGAGTTGTTGAATCTGTGGAAAGCCTGAGAGGAGCAACTGTTGAGCCATATGGGTCGTTTGTGTCTAACCTCTTCACACGATGGGGTGACTTGGATATTTCAGTTGAGTTATTAAATGGTTCACATATTCCATCCACTGGGAGAAAACAAAAACAAGTGCTATTGGGGGATCTTTTAAAAGCTTTGAGAAAGAAAGGTGGATGGAATAGCTTGCAGTTCATCTTCAATGCACGGATTCCCATTTTAAAACTTAAGAACAACCGCCAGAGTATATCCTGTGATATTTCAATCAATAACGTGGAGGCCCAAATGAAATCCAAGATTTTGTTTTGGATTAACAGGATAGATGGCCGCTTTCGTGATATGGTTTTACTGGTCAAGGAATGGGCCAAAGCACATAAAATTAATGATTCTAAAGCTGGAACTTTCAACTCCTATTCCCTTAGTTTACTTGTAATCTTTCACTTTCAGACATGTGTTCCTGCAATTTTGCCACCCCTTAATGTGATATACCCTGGCAATATGGTTGATGATCTTATAGGTGTTAAAGTGGACGCAGAGAATCTTATTGCAGAAACATTTGATGCTAACATAAACCGGTTCATATCAGACAAGTCCAGACCAATTAACAGAAAATCTGTGCCTGAACTTTTTGTGGGATTTTTAAGAAAGTTTGCTCAGATGAATTCATGGGCCTCAGAGCTGGGAATTTCCCCATATAATGGACAATGGGAACAGATAAAGAACAACATGAGATGGTTTCCCAAGACTTATGCAGTATTTGTTGAGGATCCTTTTGATCAGCCACAAAATACTGCACGGTCCGTAAACCAAGGAAAACTGGAGAAGATAACCAATGCATTTCTGAATACATACAGCTTACTTACCTCAAAGAATCTGAATCAAAGTTCTATCCTGACCTCCTTAGCACCACCAGAGGTGGCAAGAATTATTGCTAAACCTATTATCCCAGATTACAATGGTGGTTACTACCATCACCGAACTCAGCCTCAGGTGCAGAGAGCCCTGCTCCCACACCCGCACCCATACCCACGCCCACACCCACAACTGCATCCACAGGAGAAGCCACAACCACCACCACAGCGTCATTCTCGAAATGGCAGTCGAGGGACAAGCTCCAACGGTTCGACTTCAAAGGGACCTGTGAAGGCACATCAAGGCCAGCAAATATGGAGGCAAAAGACTCAATAG 1320 0.4182 MSAYSMLDIVMKDILQVVTPVQEDWEVRFAIINDLRRVVESVESLRGATVEPYGSFVSNLFTRWGDLDISVELLNGSHIPSTGRKQKQVLLGDLLKALRKKGGWNSLQFIFNARIPILKLKNNRQSISCDISINNVEAQMKSKILFWINRIDGRFRDMVLLVKEWAKAHKINDSKAGTFNSYSLSLLVIFHFQTCVPAILPPLNVIYPGNMVDDLIGVKVDAENLIAETFDANINRFISDKSRPINRKSVPELFVGFLRKFAQMNSWASELGISPYNGQWEQIKNNMRWFPKTYAVFVEDPFDQPQNTARSVNQGKLEKITNAFLNTYSLLTSKNLNQSSILTSLAPPEVARIIAKPIIPDYNGGYYHHRTQPQVQRALLPHPHPYPRPHPQLHPQEKPQPPPQRHSRNGSRGTSSNGSTSKGPVKAHQGQQIWRQKTQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0553 439 CDD NT_PAP_TUTase 27 135 - -
Lal3g0553 439 SUPERFAMILY Nucleotidyltransferase 5 147 IPR043519 -
Lal3g0553 439 Gene3D - 152 328 - -
Lal3g0553 439 Gene3D Beta Polymerase, domain 2 30 151 IPR043519 -
Lal3g0553 439 MobiDBLite consensus disorder prediction 380 402 - -
Lal3g0553 439 PANTHER PROTEIN HESO1 1 425 - -
Lal3g0553 439 MobiDBLite consensus disorder prediction 403 439 - -
Lal3g0553 439 PANTHER POLY A POLYMERASE CID PAP -RELATED 1 425 - -
Lal3g0553 439 SUPERFAMILY PAP/OAS1 substrate-binding domain 154 338 - -
Lal3g0553 439 MobiDBLite consensus disorder prediction 379 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0553 Lal-Chr3 4170564 4177745 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0553 - - ccaj:109788017 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0553 3 4170564 4177745 Lal3g0553 3 4170564 4177745 ECH
Lal3g0553 3 4170564 4177745 Lal5g1164 5 14352369 14361252 LSH