Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0287 ATGGGAGTTGTAACTGTTGGTGAATTGAAGCCTGGCATTTCAGGGAAAAGAACATTTCATCCAAGTTCAAGCATAAGGCATGCTACTGAATGGCCAATATCTGATGTTTCAACTGATATCACAATTGAAGTAGGAGCTTCAATCTTTTCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGAATTCGGAAAATGCTGTTAGAAGCAAGAGATTCAAAAGTTTCGCGCATTAGTCTCCCGAATGTTCCAGGTGGTGCAGAGGCATTTGATCTAGCTGCAAAGTTCTGCTATGGAATTAACATCGACTTTACTCTCTCGAATGTCGCTATGGTACGCTGTGCAGCTCATTTTCTCGAAATGAGCGAAGAATTTTCGGAGAAAAACTTGGCGACAAGAGCTGAATCATATTTAAAGGAGTCAGTGTTCCCTAATATAACAAGCACCATAAGTGTTCTTCACCATTGTGAAACTCTTCTTCCTATATCAGAACAAATTGGCCTTGTTAGCAGATTCATCAATGCAATAGCAAATAATGCATGCAAAGAACAACTTACCTCTGGTTTGCTTAAACTTGATCACAATTTTCCTTCTAAAAGCTTCTCAAAAACATTGGAACAAGAAACACCCTCAGATTTCTGGGCGAAATCTTTCGATGTTCTGAATCTCGATTTCTTTCGTAGAGCTTTATCTGTGGTGAAATCGAAGGGACTAAAACAAGACATGATCATCAAGATTTTGATAAACTATGCACATAATTCTCTTCAAGGGATTTCTATTAGGGACCCTCAAGTTGTAAAAAGAAGTTCACTTGACTTAGAATATCATAAGAAACAAAGGGCCATTGTTGAAACTATAGTTAGTTTACTCCCAACTCAATCAAAGAAAAGCTTTGTTCCAATGCCATTTCTCTCATATTTGTTGAAAGCTGCAATATCAGCATTAGCATCAACTCATTGTAGGTCTGATTTAGAGAGGAGAATAGGCTTACAACTTGACCAGGCAATTCTTGAAGACATTCTTATTCCGACAAACTCGCCTCGAAACACTCATAGTACAATGTATGACACAGATTTGATGTTGAGGATTTTTTCTATTTTTATCAACTTCGATGAAGAGGATGACGATGATGATGACGAAGATTGTTGCTTCCGAGATGAAAGTGAAATGGTTTATGACTTTGATAGCCTTGGATCTCCAAAACAAAGTTCAATTATTAAGGTATCAAAATTGTTAGATAATTATCTTGCTGAAGTAGCATTAGACTCAAATTTGTTGCCATCAAAATTCATAGCACTTTCAGAACTACTTCCTGATCATGCACGCATTGTAAGTGATGGACTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATGAAGGACTCAGAGCGGTACCGTCTATGCAAAACCATCGATAGTCAGAAACTATCTCAAGAAGCATGCAGCCATGCAGCACAAAATGAAAGACTACCAGTGCAAATGGCAGTTCAAGTTCTTTACATGGAACAAATCAGGCTTCGCAATGCCATGAATGGAAGACACAACCAAATATTCTTTAGTGGATTTGAGGGTCAATTTCCTCAACGTTCAGGAAGTGGTGCAGAAAGTGGAGCAATTTCACCAAGAGATAACTATGCATTAGTGAGAAGAGAGAACAAAGATCTTAAACTTGAAGTTGCAAGAATGAGAATGAGACTCAATGATTTAGAGAAAGATCATTTTTCTATGAAAAAAGAGCTTGTAAAGTCTCACCCTGCTAATAAGATTTTTAAATCATTTACTAAGAAACTAAGTAAACTTAATGCTCTATTTAGGATAAATAATGTTAAGCCAATTAGTGGCAAAGTTATTAGTTCTGAAAGTCGATTCCCATTTCCTAAACGAAGACGTCACTCAGTTTCATAA 1914 0.371 MGVVTVGELKPGISGKRTFHPSSSIRHATEWPISDVSTDITIEVGASIFSLHKFPLVSRSGRIRKMLLEARDSKVSRISLPNVPGGAEAFDLAAKFCYGINIDFTLSNVAMVRCAAHFLEMSEEFSEKNLATRAESYLKESVFPNITSTISVLHHCETLLPISEQIGLVSRFINAIANNACKEQLTSGLLKLDHNFPSKSFSKTLEQETPSDFWAKSFDVLNLDFFRRALSVVKSKGLKQDMIIKILINYAHNSLQGISIRDPQVVKRSSLDLEYHKKQRAIVETIVSLLPTQSKKSFVPMPFLSYLLKAAISALASTHCRSDLERRIGLQLDQAILEDILIPTNSPRNTHSTMYDTDLMLRIFSIFINFDEEDDDDDDEDCCFRDESEMVYDFDSLGSPKQSSIIKVSKLLDNYLAEVALDSNLLPSKFIALSELLPDHARIVSDGLYRAVDIFLKVHPNMKDSERYRLCKTIDSQKLSQEACSHAAQNERLPVQMAVQVLYMEQIRLRNAMNGRHNQIFFSGFEGQFPQRSGSGAESGAISPRDNYALVRRENKDLKLEVARMRMRLNDLEKDHFSMKKELVKSHPANKIFKSFTKKLSKLNALFRINNVKPISGKVISSESRFPFPKRRRHSVS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0287 637 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
Lal5g0287 637 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 630 - -
Lal5g0287 637 Pfam NPH3 family 212 484 IPR027356 -
Lal5g0287 637 Gene3D Potassium Channel Kv1.1; Chain A 16 139 IPR011333 -
Lal5g0287 637 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Lal5g0287 637 PANTHER OS12G0117600 PROTEIN 25 630 IPR043454 -
Lal5g0287 637 ProSiteProfiles NPH3 domain profile. 212 508 IPR027356 -
Lal5g0287 637 SMART BTB_4 38 142 IPR000210 GO:0005515
Lal5g0287 637 Coils Coil 548 575 - -
Lal5g0287 637 SUPERFAMILY POZ domain 18 123 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0287 Lal-Chr5 2557788 2562630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0287 1 458 EF-hand Containing Proteins AT2G47860 55.785 6.98e-174 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0287 - - vvi:100251110 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0287 5 2557788 2562630 Lal5g0287 5 2557788 2562630 ECH
Lal5g0287 5 2557788 2562630 Lal24g0187 24 1339462 1343685 PCT
Lal24g0187 24 1339462 1343685 Lal5g0287 5 2557788 2562630 PCT