Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0273 ATGGCTACTCTTTCTGCTTTCCCTAACCCTAATCCCAATCCTAACCCTAATTTTCACCCCGACCATTCCCAAACCCTAGACTTCGATTCCCTCATGCTCCCGCAACCCCAATCCCCGCCGCCGCAACCACCACCGGAATCTTCCTCTCCTTCACCGCCGCCGCAGCTTCTCCACGTTTCCTTCAACCAAGACCATGCCTGTTTCGCCGCCGCCACCGATAACGGCTTCCGAATCTTCAATTGCGACCCGTTCCGTGAGCTCTTCCGGCGGGAATTCGACGGCGGCGGAATCGGTCACGTTGAGATGCTGTTCCGGTGTAATATACTCGCTCTTGTTGGCGGTGGGTCTCAACCTCAGTACCCTCAAACCAAGGTTATGATCTGGGATGACCACCAGGGACGGTGCATCGGCGAGCTTTCGTTCCGGACAGTGGTTCATGGCGTTCGGCTTCGGCGGGACCGGATTATAGTAATTGTGGAGCAGAAGATATTTGTGTACAATTTCGCTGACCTGAAATTGTTGCACCAGATTGAGACCGTGGCGAACCCTAAGGGGCTTTGCGCGGTTTCGCAGGGTTCGGATTCGCTTGTTCTCGTGTGCCCCGGTTTGCATAAGGGGCAGATTAGAGTTGAGCATTATGCGTTGAAGAAGACTAAGTTCATTTCGGCGCATGATTCAAGCATTGCTTGTTTCGCTCTCACACTTGATGGGCAGTTAGTTGCTACTGCCAGCACCAAGGGGACGCTGATTCGGATATTCAATGCGGATAATGGCACACTACTTCAGGAAGTAAGAAGAGGTGCAAATGTAGCTGAGATCTTTAGTTTGGCATTCTCTGCTACTGCTCAGTGGTTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTTTTCGGCCTTAAGGTTAATTCCAGTGTTCCTGAGAATGAAAAGCCACAGAGTTCGTCCAATTCAGATGCTGCCATTAACCTATCTAACTCACCTCTCTCGTTCATTAAATTCAAGGGGGTGTTACCTAAGTATTTCAATTCAGAGTGGTCAGTTGCTCAGTTTCGCTTACAAGAGGGTTCTCATTACTCAGTTGCATTTGGTCTTCAAAAGAACACAGTTATAATCCTTGGCATGGATGGAAGCTTTTATAAATGTGAATTCGATCCAGAGCATCGAGGGGAGATGACTCAGCTGGAATATCACAACTTTTTAAAGCCAGAATCTACCATTTGA 1221 0.4906 MATLSAFPNPNPNPNPNFHPDHSQTLDFDSLMLPQPQSPPPQPPPESSSPSPPPQLLHVSFNQDHACFAAATDNGFRIFNCDPFRELFRREFDGGGIGHVEMLFRCNILALVGGGSQPQYPQTKVMIWDDHQGRCIGELSFRTVVHGVRLRRDRIIVIVEQKIFVYNFADLKLLHQIETVANPKGLCAVSQGSDSLVLVCPGLHKGQIRVEHYALKKTKFISAHDSSIACFALTLDGQLVATASTKGTLIRIFNADNGTLLQEVRRGANVAEIFSLAFSATAQWLAVSSDKGTVHVFGLKVNSSVPENEKPQSSSNSDAAINLSNSPLSFIKFKGVLPKYFNSEWSVAQFRLQEGSHYSVAFGLQKNTVIILGMDGSFYKCEFDPEHRGEMTQLEYHNFLKPESTI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0273 406 MobiDBLite consensus disorder prediction 1 56 - -
Lal5g0273 406 SUPERFAMILY WD40 repeat-like 51 302 IPR036322 GO:0005515
Lal5g0273 406 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 19 404 - -
Lal5g0273 406 MobiDBLite consensus disorder prediction 34 52 - -
Lal5g0273 406 Gene3D - 55 380 IPR015943 GO:0005515
Lal5g0273 406 Pfam WD domain, G-beta repeat 271 297 IPR001680 GO:0005515
Lal5g0273 406 SMART WD40_4 214 254 IPR001680 GO:0005515
Lal5g0273 406 SMART WD40_4 42 80 IPR001680 GO:0005515
Lal5g0273 406 SMART WD40_4 257 298 IPR001680 GO:0005515
Lal5g0273 406 MobiDBLite consensus disorder prediction 18 32 - -
Lal5g0273 406 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 19 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0273 Lal-Chr5 2433515 2438630 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0273 K22991 - gmx:100781692 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0273 5 2433515 2438630 Lal5g0273 5 2433515 2438630 ECH
Lal5g0273 5 2433515 2438630 Lal18g0435 18 3622930 3626500 LSH