Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0435 ATGGCCACTCTTTCTTCTTTTCCAAACCCTAATTTCCACCCTGACCAATCCCAAACCCTGGACTTCGATTCCGCCACGCCACCGCAGCCCCAATCCCCACCGCCACACCATTCGCCGGAATCTCCATCTCCGCCGCCGAAGCTACTCCAGCTTTCCTTCAACCAAGACCATGCCTGCTATGCCGCCGCCATGGACAACGGCTTCCGCATCTTCAATTGCGACCCGTTCCGGGAGCTTTTCCGGCGAGAATTCGACGGCGGAGGTATCGGCCACGTGGAGATGCTCTTCCGGTGTAATATACTCGCCCTCGTCGGCGGTGGTTCCCACCCTCAGTACCCTCAAACCAAGGTCATGATCTGGGACGACCACCAGGGAAGGTGCATCGGCGAACTGTCGTTCCGCACCGTGGTTCACGGTGTTCGGCTTCGTCGGGACCGAATAATCGTGATCGTGGAGCAGAAGATATTCGTGTATAACTTCGCTGACCTCAAATTGTTGCAACAGATTGAAACCGTTGCGAACCCTAAGGGGCTTTGCGAGGTTTCACAGGGTTCGGATTCACTCGTTGTCGCGTGCCCCGGTTTACATAAGGGGCAGATTAGGGTTGAGCATTATGCAATGAAGAAGACTAGGTTCATTTCAGCGCATGATTCAAGAATTGCTTGTTTTGCTCTTACGCTTGATGGCCAGTTAGTTGCTACTGCCAGCACCAAGGGCACACTGGTTCGGATATTCAATACGGATAATGGGACACTACTTCAGGAAGTAAGAAGGGGTGCAAATGTGGCAGAGATCTTTAGTTTGGCATTCTCCTCTACTGCTCAGTGGTTAGCAGTCTCAAGTGACAAGGGCACTGTTCATGTTTTCGGCCTTAAGGTTAATTCCAGTGTTCCTGAGCATGAAAAGCCACAAAGTTCATCCAATTCGGATGCTGCCATTAACCCATCTAACTCACCTCTCTCGTTCATTAAATTCAAAGGAGTGTTACCTAAGTATTTCAATTCAGAGTGGTCAGTTGCTCAGTTTCGCTTACAAGAGGGTTCTCATTACACAGTTGCGTTTGGTCTCCAAAAGAACACAGTCATAATTCTTGGCATGGATGGAAGCTTTTATCGATGTCAATTCGATCCAGAGCATGGTGGGGAGATGACTCAACTGGAACATCACAACTTTTTAAAGCCAGAAACAGCCTTGTCAGAGGATAAGAGATGA 1212 0.4967 MATLSSFPNPNFHPDQSQTLDFDSATPPQPQSPPPHHSPESPSPPPKLLQLSFNQDHACYAAAMDNGFRIFNCDPFRELFRREFDGGGIGHVEMLFRCNILALVGGGSHPQYPQTKVMIWDDHQGRCIGELSFRTVVHGVRLRRDRIIVIVEQKIFVYNFADLKLLQQIETVANPKGLCEVSQGSDSLVVACPGLHKGQIRVEHYAMKKTRFISAHDSRIACFALTLDGQLVATASTKGTLVRIFNTDNGTLLQEVRRGANVAEIFSLAFSSTAQWLAVSSDKGTVHVFGLKVNSSVPEHEKPQSSSNSDAAINPSNSPLSFIKFKGVLPKYFNSEWSVAQFRLQEGSHYTVAFGLQKNTVIILGMDGSFYRCQFDPEHGGEMTQLEHHNFLKPETALSEDKR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0435 403 Gene3D - 22 371 IPR015943 GO:0005515
Lal18g0435 403 Pfam WD domain, G-beta repeat 263 289 IPR001680 GO:0005515
Lal18g0435 403 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 16 398 - -
Lal18g0435 403 MobiDBLite consensus disorder prediction 27 46 - -
Lal18g0435 403 MobiDBLite consensus disorder prediction 1 26 - -
Lal18g0435 403 MobiDBLite consensus disorder prediction 1 48 - -
Lal18g0435 403 SUPERFAMILY WD40 repeat-like 46 314 IPR036322 GO:0005515
Lal18g0435 403 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 16 398 - -
Lal18g0435 403 SMART WD40_4 206 246 IPR001680 GO:0005515
Lal18g0435 403 SMART WD40_4 249 290 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0435 Lal-Chr18 3622930 3626500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0435 K22991 - gmx:100781692 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0435 18 3622930 3626500 Lal18g0435 18 3622930 3626500 ECH
Lal5g0273 5 2433515 2438630 Lal18g0435 18 3622930 3626500 LSH