Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0267 ATGGAAACAAGTGCAGCCATGGATGTTGAACAACAACCTTCACCCAACAACAACAACAGCAACAACCTTAAACGCTTCGCTCTTAAAAACTCTATTCAAACCAATTTCAGCGATGACTATGTTTTCCAAATCATCCCAAAGGATGATTGGAGTTCAATGGCAGTGTCACTTTCATCGAACACAGTGAAATTGTATTCACCAGAGAGTGGTCAATATTATGGAGAGTGCAAGGGTCACTATGCAACTATCAACCAGATTATGTTTTCTGATGCTTCCAATTCTCATGTTTTAAGCTCTTGTTCTTCAGATGGAACTATTAGAGCTTGGGACACAAGAACATTTCAGCAGGTTTCTTCCATCAATGCCGGTCCTTCTCAAGAGGTCTTCAGCTTCTCTTTTGGAGGGCCCGGTGGGAATTTAATTGCTGCCGGGTGTAAATCACAGATACTCTTTTGGGATTGGAGAAATAAGAAGCAAATTGCATGCCTCGAAGAATCTCACGTGGATGATGTTACTCAGGTTCATTTTGTTGACGAAGAACAAAGCAAGCTTATTTCTACTTCAGTAGATGGGTTGATATGCACGTTTGATACCACCGGAGATATCAATGATGATGATCATCTAGAATCAGTGATAAATGTGGGAACTTCAATTGCAAAAGTGGGGATTTTTGGAGATAACTGTCAGAAGCTTTGGTGTCTAACACATATTGAAACCTTGGGTATCTGGGATCGGAAAAATGGTAGAAATGAAGTAAACTTCTTGGATGCTCGTGGTTTAGCTTCTGAAAGCTGGAATTTGGATCAAGTCGACTATTTTGTTGATTGTCACTACTCCAAAGAAGCTGAAAAACTATGGGTGATTGGTGGCACTAATGCCGGTGCATTGGGCTACTTTCCTGTAAATCACAAGGGACAGGCAACAATCGGAGGCGCAGAAGCAATCCTCGAAGGTGGCCATACAGGTGTTGTTAGGAGTGTATTACCCATGTCGAGATTTCATGGTGGACCTGCTCATAGTAGTGTTAGCTCCGGCATTTTTGGATGGACAGGTGGGGAAGATGGTCGTTTATGTTGTTGGTTATCTGATGATTCCACTCAAATAAATCAATCATGGATTGCGAGCACGACGATTATGAAGCCAGAAAAAACTGGCAAGAAAAAACGACATCGCCCATATTAG 1182 0.4179 METSAAMDVEQQPSPNNNNSNNLKRFALKNSIQTNFSDDYVFQIIPKDDWSSMAVSLSSNTVKLYSPESGQYYGECKGHYATINQIMFSDASNSHVLSSCSSDGTIRAWDTRTFQQVSSINAGPSQEVFSFSFGGPGGNLIAAGCKSQILFWDWRNKKQIACLEESHVDDVTQVHFVDEEQSKLISTSVDGLICTFDTTGDINDDDHLESVINVGTSIAKVGIFGDNCQKLWCLTHIETLGIWDRKNGRNEVNFLDARGLASESWNLDQVDYFVDCHYSKEAEKLWVIGGTNAGALGYFPVNHKGQATIGGAEAILEGGHTGVVRSVLPMSRFHGGPAHSSVSSGIFGWTGGEDGRLCCWLSDDSTQINQSWIASTTIMKPEKTGKKKRHRPY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0267 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 76 119 IPR001680 GO:0005515
Lal5g0267 393 SUPERFAMILY WD40 repeat-like 37 360 IPR036322 GO:0005515
Lal5g0267 393 Gene3D - 126 381 IPR015943 GO:0005515
Lal5g0267 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 76 113 - -
Lal5g0267 393 PANTHER UNCHARACTERIZED 23 393 IPR039328 -
Lal5g0267 393 MobiDBLite consensus disorder prediction 1 22 - -
Lal5g0267 393 ProSitePatterns Trp-Asp (WD) repeats signature. 97 111 IPR019775 -
Lal5g0267 393 SMART WD40_4 69 110 IPR001680 GO:0005515
Lal5g0267 393 SMART WD40_4 113 153 IPR001680 GO:0005515
Lal5g0267 393 SMART WD40_4 156 197 IPR001680 GO:0005515
Lal5g0267 393 Gene3D - 18 125 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0267 Lal-Chr5 2329108 2335643 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0267 K24758 - gmx:100794786 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0267 5 2329108 2335643 Lal5g0267 5 2329108 2335643 ECH
Lal5g0267 5 2329108 2335643 Lal18g0429 18 3585638 3590371 LSH