Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0258 ATGCATTCTTCCAAATTCCCTCGCCGGAAAGTTGTTCCGATGAACGACGTCGACAACTCCGCCGCCAAATTGGAGCAACTCCTCATCTTCTCCGCCATCTGCAACAGCGAAGATTTAGGCCCCTTCATCAGAAAAGCCTTCATCTCCGGCAAGCCGGAAACCCTACTCCACCATCTCCGCCACTTCGCTCGAACAAAAGAATCGGAGATAGAAGAAGTGTGCAAAGAACACTACCAAGACTTCATCATCGCCGTCGACGATCTCCGATCACTTCTCTCCGACGTCGATTACATCAAATACTCACTCTCCGATTCAAATTCAAAGTTTCAATCCGTCGCTCTCCCTCTACTCTCTTCCCTAGACTCCTTCGTCGAAACGCGAAACGTTTCAAAGAACCTAAACCTCGCAATCGAATCTGTCAAAACGTGTGTTCAGTTAACGGAAGTGTGCTCACGCGCTAACCGCCATCTTTTGAGTGATAACTACTACATGGCGCTGAAATGCGTTGATACGCTAGAGAAGGAGTATTTGAATAAAACGCCGTCGTTAACGCTTAAGCGAATGCTACAAAAGAAGATTCCAGAGATTCGGTTACACATAGAGAGGAAAGTGAATAAAGAATTTGGTGACTGGTTAGTTGATATTCGAGCGGTGAGTCGAAATTTGGGGCAGTTAGCGATTGGTCAAGCTTTGGCAGCGAGACAGAGAGAAGAAGATCTCAGAATCAAACAGCGGCAAGCGGAGGAACAGAGTAGGCTTAGTTTGAGGGATTGCATTTACGCTTTAGAGGAAGAGGATGATGATGATGATAATGAAATCGGCGCCGGTGGCGGAATTGGAGAAGATGGATATGGTAATAATGGTGGTTCTGGTGGTGGAATTCTTGGATTTGATTTGACTCCATTGTATAGAGCTTACCATATTAATCAGAGTTTAGGGTTAGAAGATGGGTTTAAGAAGTATTATTTTGAGAACAGGAAGCTTCAGCTGACTTCAGATTTTCAGGTATCATCAATGACCCCTTTTCTTGAGTCCCATCAATCTTTTTTTGCTCAAATTGCGGGTTTCTTTGTAGTGGAGGATAGGGTTTTGAGGACTGGTGGTGGTTTGATATCGAAAGTGGAAGTTGACAATTTGTGGGAGATTGCTGTTAGTAAAATGTGTGCTGTTTTAGAGGACCAGTTTTCTGGAATGCAAGCTGCAAATCATCTATTGCTGATTAAGGACTATGTCAGTCTTTTAGGTTTAACCCTGCGAAGATTTGGGTACCCAACTGATGCGTTGCTTGATGTTTTGAACAAACATAGGGATAAGTACCATGAGCTGCTGTTGTCGGATTGTCAGATCCATATCGCTGAGGCCCTTGCTGCTGATAAGTTTGAGCAGATGTTGATGAAGAAGGAGTACGAGTATTCCATGAATGTGCTTTCTTTCCAAATACAAACGACAGATATTGTGCCTGCTTTTCCTTATCTAGCACCATTTTCGTCAACCGTACCAGAATGTTGTCGCATTGTGCGGTCATTCATTGAGGATTCTGTCAGTTTCATGTCATATGGCGGGCAGCTTGAGTTCTATGAAGTTGTTAAGAAATATTTGGACAGGCTTTTGAATGAGGATTTAGATGAAGCGTTGTTAAAGCTTATTAACACATCAGTTCATGGTGTCAACCAGGCAATGCAAGTAGCAGCAAATATGGCCGTATTGGAGCATGCATGTGATTTTTTCTTTTGCCATGCTGCAAAGCTTTCAGGGGTTCCCTTGAGAATGGTGGAGAGAAGCAGGAAGCAGTTTCCTTTGAGAAAAGCTCGTGATGCTGTTGAAGAGATGCTCTCTGGGTTACTCAAAGCCAAAGTTGATGGATTTATGACCTTGATTGAGAATATAAATTGGATGGCCGATGATCCATCTCAGAGGGGAAATGAATATATGAATGAGGTCATAATGTATTTGGAAATTTTGGTTTCAACTGCTCAACAGATATTGCCAGCTCAAGTCCTTAAAAGAGTTCTGCAGAGAGTTCTTTCTCACATATCAGAGAAGATAGTTGGGACTTTAGCTAGTGATTCTGTTAAGAAGTTTACTGTAAATGCTATTACTGTAATTGATATGGATATCCATCTCTTAGAATCATTTGTAGAAAGTCAGGCCCCTCTTTTCCCCGATGAAGATGTCGATGAGTTGAAAACAGCACTCGCTGAATCAAGGCAGTTGGTTAATTTGCTACTGAGCAATCATCCCGAAAACTTCCTGAATCCTGTGATCAGAGACAGAAGCTACAATACTTTAGACAGCAACAAGGTGGTAACTATTTCAGAAAAGTTGAGGGATTCTTCAGATGGGCTCTTTGGAAACTTCAGTGGTCATGGAGCCAAGCAGAATCCAAAAAAGAAATTACTGGATGCAATGATAAAAAGACTCAAGGATGCTAACTGA 2436 0.4249 MHSSKFPRRKVVPMNDVDNSAAKLEQLLIFSAICNSEDLGPFIRKAFISGKPETLLHHLRHFARTKESEIEEVCKEHYQDFIIAVDDLRSLLSDVDYIKYSLSDSNSKFQSVALPLLSSLDSFVETRNVSKNLNLAIESVKTCVQLTEVCSRANRHLLSDNYYMALKCVDTLEKEYLNKTPSLTLKRMLQKKIPEIRLHIERKVNKEFGDWLVDIRAVSRNLGQLAIGQALAARQREEDLRIKQRQAEEQSRLSLRDCIYALEEEDDDDDNEIGAGGGIGEDGYGNNGGSGGGILGFDLTPLYRAYHINQSLGLEDGFKKYYFENRKLQLTSDFQVSSMTPFLESHQSFFAQIAGFFVVEDRVLRTGGGLISKVEVDNLWEIAVSKMCAVLEDQFSGMQAANHLLLIKDYVSLLGLTLRRFGYPTDALLDVLNKHRDKYHELLLSDCQIHIAEALAADKFEQMLMKKEYEYSMNVLSFQIQTTDIVPAFPYLAPFSSTVPECCRIVRSFIEDSVSFMSYGGQLEFYEVVKKYLDRLLNEDLDEALLKLINTSVHGVNQAMQVAANMAVLEHACDFFFCHAAKLSGVPLRMVERSRKQFPLRKARDAVEEMLSGLLKAKVDGFMTLIENINWMADDPSQRGNEYMNEVIMYLEILVSTAQQILPAQVLKRVLQRVLSHISEKIVGTLASDSVKKFTVNAITVIDMDIHLLESFVESQAPLFPDEDVDELKTALAESRQLVNLLLSNHPENFLNPVIRDRSYNTLDSNKVVTISEKLRDSSDGLFGNFSGHGAKQNPKKKLLDAMIKRLKDAN 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0258 811 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 603 750 IPR042044 -
Lal5g0258 811 Coils Coil 230 250 - -
Lal5g0258 811 PANTHER SEC15 7 811 IPR007225 GO:0006886|GO:0090522
Lal5g0258 811 PIRSF Sec15 3 811 IPR007225 GO:0006886|GO:0090522
Lal5g0258 811 Gene3D - 426 597 IPR042045 -
Lal5g0258 811 Pfam Exocyst complex subunit Sec15-like 471 775 IPR046361 -
Lal5g0258 811 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 641 754 IPR014772 -
Lal5g0258 811 PANTHER EXOCYST COMPLEX COMPONENT SEC15B 7 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0258 Lal-Chr5 2263799 2267826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0258 K19985 - gmx:100796432 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0258 5 2263799 2267826 Lal5g0258 5 2263799 2267826 ECH
Lal3g1352 3 19320233 19323533 Lal5g0258 5 2263799 2267826 LSH