Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1352 ATGCACTCTTCCAAACCCCCGCGCCGGAAAGTAGTTCCGGCGAACGGCGAAGATTCCGGCGACAAACTTGAACAACTCCTTCTCTCCTCCGTCATCTGCAACAACGAAGACTTAGGTCCGTTCATCAGAAAAGCCTTCGTCTCCGGCAAACCGGAAACCCTCCACCACCACCTCCGCCACTTCGCTCGGACCAAAGAATCCGAGATCGAAGAAGTTTGCAAAGAACACTACCAAGACTTTATCGTCGCCGTCGACGATCTTCGATCTCTTCTCTCCGACGTCGATTCTCTCAAATCATCGCTCTCCGATTCAAACTCCAAGCTCCAATCCGTTGCTATTCCTCTTCTCTCTTCCCTCGATGCGTTCGTCGAGACTCGAAACGTTTCAAAGAATGTCAACCTCGCAATCGAATCGGTCAACACGTGTATTCGGTTAACGGAAGTGTGCTCACGCGCTAACCGCCATCTCTCAAATGATAACTTCTACATGGCGTTGAAATGCGTTGACGCGATTGAGAGAGAGTATTTGCACAAAACGCCGTCGTCGACGCTTAAACGAATGCTGGAGAAGAAGATTCCGGAGATTAGGTCACACATAGAGAGGAAAGTGAATAAGGAATTTGGTGACTGGTTGGTTGAGATCCGAGTAGTGAGTCGGAATTTGGGGCAGTTAGCGATAGGGCAAGCTTCGGCGGCGAGGCAGAGAGAAGAAGATCTTAGAATCAAGCAGCGGCAAGCGGAGGAGCAAAGTAGGCTTAGCTTGAGGGACTGTATTTATGCGCTTGAGGAAGATGATGAGGATGGAATCGTGGCCGGTGGTGGTGGAATTGGAGAAGATGGATATAGTAATAATGGTGGTGGTGGAATTCATGGATTTGATTTGACTCCGTTGTACAGAGCTTACCATATTCATCAGACTTTAGGGTTAGAAGATCGATTTAAGCAATATTATTTTGAGAACCGGAAGCTTCAGTTGACTTCAGATTTTCAGGTATCATCAATGACCCCTTTTCTTGAGTCCCACCAAACCTTTTTTGCTCAAATTGCGGGTTTCTTTGTAGTAGAGGATAGGGTTTTGAGGACTGGTGGTGGTTTGATATCGAAAATGGAAGTTGAGAATTTGTGGGAGATTGCTGTTAGTAAAATGTGTTCTGTTTTAGAGGATCAGTTTTCCAGAATGCAAACTGCAAATCATCTATTGCTGATCAAGGACTATGTTAGTCTCTTAGGTGTAACCCTACGTAGATTTGGGTACCCAATTGATGCATTGCTTGATGTTTTGAGCAAACATAGGGATAAATACCATGAGCTGCTATTATCAGATTGCCGGAAGCAGATTGCTGAGGCCCTCGCTGCTGATAAGTTCGAGCAAATGTTGATGAAGAAGGAGTATGAGTATTCCATGAATGTGCTTTCTTTCCAAATACAAACGTCAGATATTGTACCTGCTTTTCCTTATCTAGCACCGTTTTCGTCAACGGTACCGGATTGTTGTCGCATTGTGAGGTCATTCATTGAGGATTCTGTAAGTTTCATGTCATATGGCGGGCAGCTTGAGTTCTATGAAGTTGTTAAGAAATATTTGGACAGGCTTCTGAGTGAGGCTTTAGATGAAGCTTTGTTAAAGCTTATTAACACATCAGTTAATGGTGTCTCCCATGCAATGCAAGTAGCAGCAAATATGACTGTGTTGGAGCGTGCGTGTGACTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGGTTCCCTTGAGATTGGTGGAAAGAAGCAGGAGACAGTTCCCTTTGAGAAAAGCTCGTGATGTTGCCGAAGAGATGCTCTCTGGGTTACTCAAAGCCAAAGTTGATGGATTTATGACCTTGATTGAGAATGTAAATTGGATGGCCGATGAGCCATCTCAGAGTGGAAATGAATATGTGAACGAGGTAATAATTTATTTGGAAATTTTGGTTTCGACCGCTCAACAGATATTGCCAGGTCAGGTCCTTAAAAGAGTTCTGCAGAGAGTTCTTTCCCACATATCAGATAAAATAGTTGGGACCTTAATTAGTGATTCTGTTAAGAGGTTTAATGTAAATGCTATTACTGGAATTGATGTGGATATCCGGCTCTTAGAATCATTTGCGGAAAATCAGGGTCCCATTTTCCCCGATGGGGATGTCGATCAGTTGAGAACAGCACTTGTTGAGTCAAGGCAATTGATTAATTTGCTACTAAGCAATCATCCCGAAAACTTCCTGAATCCAGTGATCAGGGAGAGGAGTTACAATACTTTGGACTACAGGAAAGTGGTGGCTGTTTCGGAGAAGTTGAAGGATCCTTCAGATCGGCTGTTTGGAACCTTCGGTAGTCGTGGAACCAGGCAGAATCCAAAAAAGAAATCACTGGATGCATTGATAAAAAGACTTAAGGATGTTAGCTGA 2421 0.4416 MHSSKPPRRKVVPANGEDSGDKLEQLLLSSVICNNEDLGPFIRKAFVSGKPETLHHHLRHFARTKESEIEEVCKEHYQDFIVAVDDLRSLLSDVDSLKSSLSDSNSKLQSVAIPLLSSLDAFVETRNVSKNVNLAIESVNTCIRLTEVCSRANRHLSNDNFYMALKCVDAIEREYLHKTPSSTLKRMLEKKIPEIRSHIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASAARQREEDLRIKQRQAEEQSRLSLRDCIYALEEDDEDGIVAGGGGIGEDGYSNNGGGGIHGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFVVEDRVLRTGGGLISKMEVENLWEIAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRFGYPIDALLDVLSKHRDKYHELLLSDCRKQIAEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYLAPFSSTVPDCCRIVRSFIEDSVSFMSYGGQLEFYEVVKKYLDRLLSEALDEALLKLINTSVNGVSHAMQVAANMTVLERACDFFFRHAAQLSGVPLRLVERSRRQFPLRKARDVAEEMLSGLLKAKVDGFMTLIENVNWMADEPSQSGNEYVNEVIIYLEILVSTAQQILPGQVLKRVLQRVLSHISDKIVGTLISDSVKRFNVNAITGIDVDIRLLESFAENQGPIFPDGDVDQLRTALVESRQLINLLLSNHPENFLNPVIRERSYNTLDYRKVVAVSEKLKDPSDRLFGTFGSRGTRQNPKKKSLDALIKRLKDVS 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1352 806 PANTHER EXOCYST COMPLEX COMPONENT SEC15B 7 806 - -
Lal3g1352 806 Pfam Exocyst complex subunit Sec15-like 466 770 IPR046361 -
Lal3g1352 806 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 598 745 IPR042044 -
Lal3g1352 806 Coils Coil 229 249 - -
Lal3g1352 806 PIRSF Sec15 5 806 IPR007225 GO:0006886|GO:0090522
Lal3g1352 806 PANTHER SEC15 7 806 IPR007225 GO:0006886|GO:0090522
Lal3g1352 806 Gene3D - 420 591 IPR042045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1352 Lal-Chr3 19320233 19323533 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1352 K19985 - gmx:100796432 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1352 3 19320233 19323533 Lal3g1352 3 19320233 19323533 ECH
Lal3g1352 3 19320233 19323533 Lal5g0258 5 2263799 2267826 LSH