Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0251 ATGGTATCTGCTCCTTCCATGTCAGTTTCTTTAGAATGTGTAAATGTATGCAAGTTATGGAGAGGGGACGGTAGTGGTAGCTATGACTGTAGTCTTCTCTCGTGTGCTTGGAAAGCTCCTAGGGTCCTTACCGGATTCCTGGCCAGCACAGCTCATCCTGATCAGTGTTCCTCATTGTTGAATGGGCGAAACGGACGAAGGAACCGGTATAATTTTGATTGTGAAGCCTGTAGTACAATGGATTCATATCCAGATGAAGCACTTAATATCTTGCTTTTTGAAGGACTCTCTAGATCTAGTTTGTCTCAAGTCACCCCTCGAAGATGGCAACTACGTTGTTCGTCGGTGTTCTCCCGGGAAGCTGCCAATGAAGTTTCCCCTGAAAGTTTGTGGGATGATCTTAAACCTGTGATCTCATACCTGTCTCATAAAGAACTAGAGTTAGTCCATAGTGCTCTTATGTTAGCATTTGAAGCCCATGATGGTCAGAAAAGACGCAGTGGTGAACCTTTTATCATTCATCCAGTTGAGGTTGCATGTATTCTGGGAGAACTTGAACTTGACTGGGAGTCAATTGCTGCCGGATTACTTCACGACACAGTCGAGGATACAAATGTCGTTACTTTTGAGAGGATTGAGGAGGAGTTTGGTGCTACTGTACGCCACATTGTGGAAGGAGAGACTAAGGTGTCAAAGCTTGGAAAACTGAAGTATAAGAATGATAAAGATTCCATTCAAGATGTGAAAGCAGAGGATCTTCGGCAAATGTTTCTGGCCATGACAGAGGAGGTTCGTGTTATCGTTGTCAAATTAGCTGACAGGTTACATAACATGCGCACTCTTTCACATATGCCTCCACATAAACAGACTAGCATTGCAATGGAGACATTACAGGTATTTGCCCCTTTAGCAAAGTTGCTTGGGATGTATCAAATTAAGGCAGAACTAGAAAACCTCTCATTCATGTACACAAATGCCGAAGATTATGCTAAGGTCAAGAGAAGGGTTGCAGACCTATACAAAGAACATGAGAAAGACCTTCTGGAGGCTAACAAAATATTGGTGAAGAAAATCGAAGACGATCATTTGTTGAATCTTCTGACTATTAAAACGGAAGTCCGTGCTGTCTGCAAAGAGCCTTACAGTGTTTATAAAGCTGTTCTCAAATCAAAAGGTTCAATCAATGAGATTAACCAAATTGCACAGCTTCGAATTATCATTAAACCAAAGGCGTGCATTGGGGTTGGACCTCTATGCGCTCCACAGCAGATATGCTATCATGTTCTCGGGTTGGTCCATGAAATTTGGAGCCCTATTCCTAGATCTATGAAGGATTATATTGCCACCCCTAAACCTAATGGCTACCAGAGTCTTCAGACAACCGTAATTCCATTTTTGTACGAGAGTATGTTTAGGCTAGAAGTACAGATTAGAACAGAAGAAATGGATTTGATAGCTCAGAGGGGTATTGCTGCTCATTATAGCGGGAAAGAATTTATTACTGGCTTGGTTGGAAGTGCAATGCCTAGTAGTAAAAGCTCAAGAGGGAAGACAGTGTGCCTTAACAATGCTAACATTGCACTCAGAATTGGCTGGCTGAATGCAATTAGAGAATGGCAAGAAGAGTTTGTCGGGAACATGAGTTCTCGGGAATTTGTTGACACTATTACAAGAGATCTGTTGGGCAGTCGTGTCTTTGTATTTACACCCAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTACATGATACACACTGAAATTGGTAACAAGATGGTAGCTGCAAAGGTCAACGGTATTCTTGTTTCTCCTTCGCACTTGCTTGCAAATGCAGAAGTAGTGGAGATAATCATGTACAATGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCAAGACACAAAATAATGAAGTTTCTGAGAGAGCAAGCTGCACGTTCTGCTACTGATAACACGACAGATGCAGTCAATGAGTTTGTGTCTGATTCTGAATGGAATAGTGAGTCTGAAGAACTGTCAGATGGTTCCGGTGGCTCCAAACCCACGATGGGGGAAATGTTTGTAAATGGAGTGGAAATATCAAATCCAGATAGAGGTGAGGTTCTCCGCGAAAGTAAGAATTGGAGTGTTTGGACCCCCAAGGTCAATGGAAAACATAACAAGCATGTACAGTATGATAGTTTGGGTGAAGGGGAGATATTGCTGCAGAGAAATCATAAGGCCAAGATGCTTCAAGTTAACACTCCAAGATATAAGGAAGTCTTGCCAGGTTTAGAAAGTTGGCAAGCCCATAAAATTGCTTCTTGGCACAACATAGAAGGGCATTCCATCCAATGGTTGTGTGTAGTATGCATAGACCGAAGAGGAATGATGGCTGAGGTCACTACAGTGTTGGCCACTGCAGGTGTAAGCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCGGTTATGTTATTTCGTGTAGAGGGAAATTTGGAAAACTTGGTGAGTACTAGCTCTAGAGTAGATCTTATACTGGGTGTTTTGGGGTGGTCTACTGGTTGCAGCTGGCCAAGCTTGATGGAAGACCCAATACCGTGA 2643 0.4283 MVSAPSMSVSLECVNVCKLWRGDGSGSYDCSLLSCAWKAPRVLTGFLASTAHPDQCSSLLNGRNGRRNRYNFDCEACSTMDSYPDEALNILLFEGLSRSSLSQVTPRRWQLRCSSVFSREAANEVSPESLWDDLKPVISYLSHKELELVHSALMLAFEAHDGQKRRSGEPFIIHPVEVACILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNDKDSIQDVKAEDLRQMFLAMTEEVRVIVVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKAELENLSFMYTNAEDYAKVKRRVADLYKEHEKDLLEANKILVKKIEDDHLLNLLTIKTEVRAVCKEPYSVYKAVLKSKGSINEINQIAQLRIIIKPKACIGVGPLCAPQQICYHVLGLVHEIWSPIPRSMKDYIATPKPNGYQSLQTTVIPFLYESMFRLEVQIRTEEMDLIAQRGIAAHYSGKEFITGLVGSAMPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGILVSPSHLLANAEVVEIIMYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSATDNTTDAVNEFVSDSEWNSESEELSDGSGGSKPTMGEMFVNGVEISNPDRGEVLRESKNWSVWTPKVNGKHNKHVQYDSLGEGEILLQRNHKAKMLQVNTPRYKEVLPGLESWQAHKIASWHNIEGHSIQWLCVVCIDRRGMMAEVTTVLATAGVSICSCVAEIDGGRGMAVMLFRVEGNLENLVSTSSRVDLILGVLGWSTGCSWPSLMEDPIP 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0251 880 SMART RelA_SpoT_2 378 500 IPR007685 GO:0015969
Lal5g0251 880 MobiDBLite consensus disorder prediction 678 698 - -
Lal5g0251 880 SUPERFAMILY Nucleotidyltransferase 328 501 IPR043519 -
Lal5g0251 880 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 874 - -
Lal5g0251 880 CDD ACT 797 847 - -
Lal5g0251 880 Pfam Region found in RelA / SpoT proteins 378 495 IPR007685 GO:0015969
Lal5g0251 880 Pfam TGS domain 565 623 IPR004095 -
Lal5g0251 880 SUPERFAMILY TGS-like 552 623 IPR012676 -
Lal5g0251 880 Pfam HD domain 152 309 - -
Lal5g0251 880 SUPERFAMILY ACT-like 793 845 IPR045865 -
Lal5g0251 880 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
Lal5g0251 880 Gene3D - 796 858 - -
Lal5g0251 880 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Lal5g0251 880 CDD TGS_RSH 566 623 IPR033655 -
Lal5g0251 880 CDD HDc 169 300 IPR003607 -
Lal5g0251 880 Gene3D - 558 632 IPR012675 -
Lal5g0251 880 Gene3D Hypothetical protein af1432 129 324 - -
Lal5g0251 880 SUPERFAMILY HD-domain/PDEase-like 135 324 - -
Lal5g0251 880 SMART hd_13 167 287 IPR003607 -
Lal5g0251 880 CDD NT_Rel-Spo_like 349 488 IPR007685 GO:0015969
Lal5g0251 880 ProSiteProfiles TGS domain profile. 561 624 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0251 Lal-Chr5 2197418 2205733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0251 176 496 EF-hand Containing Proteins AT3G17470 28.144 8.93e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0251 K00951 - gmx:100786637 1483.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0251 5 2197418 2205733 Lal5g0251 5 2197418 2205733 ECH
Lal3g1358 3 19355019 19363118 Lal5g0251 5 2197418 2205733 LSH