Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1358 ATGGCATCTTCACCTTCCATGTCAGTTTCGTTAGAATGCGTGAATATATGCAAGTTATGGAGAGGGGATGGAAATGGTAGATATGACTGTAGTCTTCTTTCGTGTGCCTGGAAAGCTCCACGGGTCCTTTCTGGTTTCCTTGCTAGCACAGCTCATCCTGATCAATGTTCCTCATTGTTGAATGGGCGAAATGGACGAAGGAACCGGTATAATTTTGGTTGTGAAGCCTTTAGTACAATAGGTTCATATCCCGATGAAGGGCTTGATGTGTTACTTTTTGAAGGACTCTCAAGATCTATCTTGTCTCGAGTTACTTCTCGAAGATGGCAATTATGTTGTTCGTCAGAGTCCTCCTTGGAAACTTCCAATGAGGTTTCCGCTGAAAGTTTGTGGGAGGAACTTAAACCTGTGATCTCATACCTGTCCCCTAAAGAACTGAAGTTAGTCTCTGATGCTCTTATGTTGGCATTTGAAGCCCATGATGGTCAGAAAAGGCGCAGTGGTGAACCCTTTATCATTCATCCAGTTGAGGTTGCACGTATTCTCGGAGAACTTGAACTTGACTGGGAATCAATCGCTGCTGGATTACTTCATGACACAGTCGAAGATACAAATGTCGTTACTTTTGAGAGGATTGAGGAGGAGTTTGGTGCTACTGTGCGTCACATTGTGGAAGGAGAGACTAAGGTGTCGAAGTTGGGAAAGTTGAAGTATAAGAATGATAAGGAGTCTGCTCAAGACGTGAAAGCAGAGGATCTTCGGCAAATGTTTCTGGCCATGACAGAGGAGGTTCGCATTATCATTGTCAAATTAGCTGACAGGTTACATAACATGCGCACTCTAGCACATATGCCTCCACATAAACAGACTAGCATTGCAATGGAGACACTACAGATATTTGCCCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGGCAGAACTAGAAAATCTATCATTCATGTACACAAATGCTGAAGATTATGCTAAGGTGAAGAGAAGAGTTGCAGACCTATATAAAGAACATGAGAAAGACCTTTTGGAGGCTAACAAAATATTGGTGAAAAAAATTGAAGATGATCAGTTGTTGGATCTTTTGACTGTTAAAACGGAAGTGCGTGCCGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTTCTCAAATCAAAAGGTTCAATCAATGAGATTAACCAAATTGCACAGCTTCGAATTATCATCAAACCAAAGCCGTGCATTGGGGTTGGACCTTTATGCGGTCCACAGCAGATTTGCTATCATGTTATGGGGTTGGTGCATGGAATATGGACCCCTGTTCCTAGATCTGTAAAGGATTATATTGCAACCCCTAAACCGAATGGCTACCAGAGTCTTCAGACAACCGTAATTCCATTTTTGTACGAGAGTATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGCGGTAAAGAATTTGTCACTGGCTTGGTTGGAAGTGCAATGCCTAATAGTAAAAGCTCAAGAGGGAAAACAGTATGCCTTAACAATGCCAACATTGCACTCAGAATTGGCTGGCTGAATGCAATTAGAGAATGGCAAGAGGAGTTCGTTGGCAACATGAGTTCTAGAGAATTTGTTGACACTATTACAAGAGATTTGTTGTGCAGTCGTGTCTTCGTATTTACACCCAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTACGCTTACATGATACACACTGAAATCGGTAACAAGATGGTAGCTGCAAAGGTCAACGGTAATCTTGTTTCTCCTTCGCACTTACTTGCAAATGCAGAAGTAGTGGAGATAATCACGTATAATGCACTTTCGAGCAAATCAGCTTTTCAAAGGCATAAGCAGTGGTTGCAACATGCTAAAACTCGTAGCGCAAGACACAAAATAATGAAGTTTCTGAGGGAGCAGGCTGCACGTTCTGCTGCTGATATCACTACCGAAGCAGTCAATGAATTTGTCACTGATTCTGAAGCGGATAGTGAATCTGAAGAACTGTCAGATTGTTCCAATGGCTCCAAACCCATGACGGGGAAAATGTTTGTAAATGGAGTTGAAATATCGAATCCAGACAGAGGTGAGGTTATCCTCGAAGGTAAGAATGGAAGTGTTTGGACCCCGAAGGTCAATGGAAAACATAATAAGCATGTACAGCATGAGAGTTTGAAGGGTGAAGGGGATATTTTGCTGCAGAGAAACCATGTGGCCAAAATGATTCAAGTTAACACTCCAAGATATAAGGAAGTCTTGCCAGGTTTAGAAAGTTGGCAAACCCATAAAATTTCCTCTTGGCAACATATAGAAGGTCATTCCATCCAATGGTTGTGTGTAGTATGCATAGACCGAAGAGGCATGATGGCTGAGGTCACCACGGCATTGGCGAATGCAGGTGTAACCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGTTATTTCATGTAGAGGCAAATTTGGAAAACTTGGTCAGTGCTTGCTCTACAGTAGATCTTATACTTGGCGTTTTGGGGTGGTCTACTGGTTGCAGCTGGCCAAGCTTGATGGAAGACCGTGACGTTCTCGAATGCTAG 2655 0.426 MASSPSMSVSLECVNICKLWRGDGNGRYDCSLLSCAWKAPRVLSGFLASTAHPDQCSSLLNGRNGRRNRYNFGCEAFSTIGSYPDEGLDVLLFEGLSRSILSRVTSRRWQLCCSSESSLETSNEVSAESLWEELKPVISYLSPKELKLVSDALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNDKESAQDVKAEDLRQMFLAMTEEVRIIIVKLADRLHNMRTLAHMPPHKQTSIAMETLQIFAPLAKLLGMYQIKAELENLSFMYTNAEDYAKVKRRVADLYKEHEKDLLEANKILVKKIEDDQLLDLLTVKTEVRAVCKEPYSVYKAVLKSKGSINEINQIAQLRIIIKPKPCIGVGPLCGPQQICYHVMGLVHGIWTPVPRSVKDYIATPKPNGYQSLQTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGKEFVTGLVGSAMPNSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLCSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPSHLLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNEFVTDSEADSESEELSDCSNGSKPMTGKMFVNGVEISNPDRGEVILEGKNGSVWTPKVNGKHNKHVQHESLKGEGDILLQRNHVAKMIQVNTPRYKEVLPGLESWQTHKISSWQHIEGHSIQWLCVVCIDRRGMMAEVTTALANAGVTICSCVAEIDGGRGMAVMLFHVEANLENLVSACSTVDLILGVLGWSTGCSWPSLMEDRDVLEC 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1358 884 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
Lal3g1358 884 Pfam TGS domain 565 624 IPR004095 -
Lal3g1358 884 Gene3D Hypothetical protein af1432 123 324 - -
Lal3g1358 884 CDD TGS_RSH 566 624 IPR033655 -
Lal3g1358 884 SMART RelA_SpoT_2 378 500 IPR007685 GO:0015969
Lal3g1358 884 CDD NT_Rel-Spo_like 368 488 IPR007685 GO:0015969
Lal3g1358 884 SUPERFAMILY ACT-like 797 851 IPR045865 -
Lal3g1358 884 MobiDBLite consensus disorder prediction 678 697 - -
Lal3g1358 884 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Lal3g1358 884 Pfam Region found in RelA / SpoT proteins 378 495 IPR007685 GO:0015969
Lal3g1358 884 SUPERFAMILY Nucleotidyltransferase 328 501 IPR043519 -
Lal3g1358 884 CDD HDc 169 300 IPR003607 -
Lal3g1358 884 Gene3D - 797 862 - -
Lal3g1358 884 ProSiteProfiles TGS domain profile. 563 624 IPR004095 -
Lal3g1358 884 Gene3D - 558 633 IPR012675 -
Lal3g1358 884 Pfam HD domain 152 309 - -
Lal3g1358 884 SUPERFAMILY TGS-like 552 624 IPR012676 -
Lal3g1358 884 SUPERFAMILY HD-domain/PDEase-like 135 324 - -
Lal3g1358 884 SMART hd_13 167 287 IPR003607 -
Lal3g1358 884 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1358 Lal-Chr3 19355019 19363118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1358 181 496 EF-hand Containing Proteins AT3G17470 28.916 7.87e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1358 K00951 - gmx:100786637 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1358 3 19355019 19363118 Lal3g1358 3 19355019 19363118 ECH
Lal3g1358 3 19355019 19363118 Lal5g0251 5 2197418 2205733 LSH