Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0240 ATGGCGCATCGAAGAACGAAGCTATTGTTCCTTCTATGCGCTATATGCTATTCTCTCAACGCCATTGCTGGAAAAAGCTACTATGATATACTTCAAGTTTCTAAGAGTGCATCAGAGGAGCAGTTAAAAAAAGCTTATAGGAAACTAGCATTGAAGTATCATCCTGATAAGAATCAGGGAAATGAAGAAGCAAATAAGAAATTTGCTGAAATTAACAATGCGTATGAAGTATTATCCGATAGCGAGAAGAGAAATATTTATGATAGATATGGTGAAGAGGGTCTGAAGCAGCATGCTGCTAGTGGAGGCAGAGGAAGTGGAATGGGAATGAACGTTAATGACATTTTCAGTTCTTTCTTTGGTGGTGGCTCAATGGAGGAGGAGGAAGAAAGAATTGTGAAGGGTGATGACGTGATTGTTGAATTGGATGCGTCCCTCGAAGATTTGTACAAGGGAGGTTCCTTGAAGGTATGGAGGGAGAAAAATGTTTTGAAGCCAGCACCTGGGAAGAGACGCTGTAATTGTAGAAATGAGGTTTATCATAAGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGCCCTAATGTCAAATATGTAAGGGAAGGGTACTTCATCACTGTTGATATTGAGAAAGGCATGCAAGATGGACAGGAGGTTTCATTTTATGAGGATGGTGAGCCCATAATTGACGGAGAATCTGGAGATTTAAGGTTTCGTATTCGTTCTGCACCCCATGATCTCTTTAGAAGGGAAGGCAATGATTTGCACACCACTGTAACTATAACTCTGGTTCAAGCCCTAGTTGGTTTTGAGAAGACCATTAAACACCTAGATGAGCATCTGGTGAACATAAGCTCAAAGGGAATCACGAAACCGAAGGAAGTGAGGAAGTTCAAAGGGGAGGGCATGCCATTGCATATGAGCATGAAGAAAGGAAATCTATACGTCACTTTTGAGGTTCTATTCCCCACGTCACTAACGGAAGAACAGAAAACAAAGATAAAAGAAACTCTCGGTTAG 1041 0.415 MAHRRTKLLFLLCAICYSLNAIAGKSYYDILQVSKSASEEQLKKAYRKLALKYHPDKNQGNEEANKKFAEINNAYEVLSDSEKRNIYDRYGEEGLKQHAASGGRGSGMGMNVNDIFSSFFGGGSMEEEEERIVKGDDVIVELDASLEDLYKGGSLKVWREKNVLKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVSFYEDGEPIIDGESGDLRFRIRSAPHDLFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVNISSKGITKPKEVRKFKGEGMPLHMSMKKGNLYVTFEVLFPTSLTEEQKTKIKETLG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0240 346 Coils Coil 61 81 - -
Lal5g0240 346 Gene3D DnaJ domain 23 129 IPR036869 -
Lal5g0240 346 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Lal5g0240 346 CDD DnaJ_C 136 333 - -
Lal5g0240 346 CDD DnaJ 27 80 IPR001623 -
Lal5g0240 346 PRINTS DnaJ domain signature 28 46 IPR001623 -
Lal5g0240 346 PRINTS DnaJ domain signature 46 61 IPR001623 -
Lal5g0240 346 PRINTS DnaJ domain signature 63 83 IPR001623 -
Lal5g0240 346 PRINTS DnaJ domain signature 83 102 IPR001623 -
Lal5g0240 346 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 345 IPR044713 GO:0006457|GO:0030544
Lal5g0240 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 134 253 IPR008971 GO:0006457|GO:0051082
Lal5g0240 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 255 339 IPR008971 GO:0006457|GO:0051082
Lal5g0240 346 Pfam DnaJ C terminal domain 140 330 IPR002939 -
Lal5g0240 346 Gene3D - 252 330 - -
Lal5g0240 346 SUPERFAMILY Chaperone J-domain 23 123 IPR036869 -
Lal5g0240 346 Gene3D - 130 251 - -
Lal5g0240 346 SMART dnaj_3 25 83 IPR001623 -
Lal5g0240 346 Pfam DnaJ domain 27 88 IPR001623 -
Lal5g0240 346 PANTHER BNAA09G39960D PROTEIN 8 345 - -
Lal5g0240 346 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0240 Lal-Chr5 2094493 2099184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0240 42 88 Miscellaneous Gene Families AT5G49580 57.447 1.97e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0240 K09517 - jre:108991423 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0240 5 2094493 2099184 Lal5g0240 5 2094493 2099184 ECH
Lal5g0240 5 2094493 2099184 Lal18g0420 18 3537852 3542657 LSH