Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0420 ATGGCGCGCCGAAGAGCCAAGTTGTTGTTCCTTCTATGCGCTCTATTATGCTATTCTCTCAACGTCATTGCAGCAAAGAGCTATTACGATATACTTCAAGTATCAAAGGGTGCATCAGATGAACAGATAAAAAGAGCATATAGGAAGCTTGCATTGAAGTACCATCCTGATAAGAACCCTGGAAATGAAGAAGCTAATAAGAAATTTGCTGAGATTAACAATGCGTATGAAGTATTGTCGGATAGCGAGAAGAGAAATATTTATAACAGATACGGTGAAGATGGTCTGAAGCAGCATGCTGCTAGTGGAGGCAGAGGTGGTGGAATGGGAATGGATATTAATGACATTTTCAGTTCTTTCTTTGGCGGTAACTCAATGGAGGAGGAGCAAGAAAGAATTGTAAAAGGTGATGACGTGACTGTTGAATTGAGTGCATCCCTCGAAGATTTGTACATGGGAGGTTCCTTGAAGGTATGGAGGGAGAAAAATGTTTTAAAGCCAGCACCTGGGAAGAGACGCTGTAATTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGCCCTAATGTCAAATTTGTAAGGGAGGGATATTTTGTCACTGTTGATATTGAGAAAGGCATGCAAGATGGACAGGAGGTGCTATTTTATGAGGATGGTGAGCCCATAGTTGATGGAGAACCTGGAGACTTAAAGTTCCGAATCCGTACTGCACCTCATGATCTCTTCAGAAGGGAAGGCAATGACTTGCATACCACTGTCACTATAACTCTGGTTCAAGCTCTTGTTGGTTTTGAGAAGACCATTACACACCTAGATGAGCATCTGGTGGACATAAGCACAAAGGGAATCACAAAGCCAAAGGAAGTGAGGAAATTCAAAGGAGAGGGTATGCCATTGCACGTGAGCACAAAGAAGGGAGATCTATATGTCACTTTTGAGGTTTTATTCCCCACCTCACTAACTGAGGAACAGAAAACAAAGATAAAAGAAACTCTTGGTTAG 1044 0.4215 MARRRAKLLFLLCALLCYSLNVIAAKSYYDILQVSKGASDEQIKRAYRKLALKYHPDKNPGNEEANKKFAEINNAYEVLSDSEKRNIYNRYGEDGLKQHAASGGRGGGMGMDINDIFSSFFGGNSMEEEQERIVKGDDVTVELSASLEDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKFVREGYFVTVDIEKGMQDGQEVLFYEDGEPIVDGEPGDLKFRIRTAPHDLFRREGNDLHTTVTITLVQALVGFEKTITHLDEHLVDISTKGITKPKEVRKFKGEGMPLHVSTKKGDLYVTFEVLFPTSLTEEQKTKIKETLG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0420 347 CDD DnaJ_C 137 334 - -
Lal18g0420 347 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
Lal18g0420 347 CDD DnaJ 28 81 IPR001623 -
Lal18g0420 347 PANTHER BNAA09G39960D PROTEIN 12 346 - -
Lal18g0420 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 135 254 IPR008971 GO:0006457|GO:0051082
Lal18g0420 347 Gene3D - 131 252 - -
Lal18g0420 347 Pfam DnaJ domain 28 89 IPR001623 -
Lal18g0420 347 PRINTS DnaJ domain signature 29 47 IPR001623 -
Lal18g0420 347 PRINTS DnaJ domain signature 47 62 IPR001623 -
Lal18g0420 347 PRINTS DnaJ domain signature 64 84 IPR001623 -
Lal18g0420 347 PRINTS DnaJ domain signature 84 103 IPR001623 -
Lal18g0420 347 SUPERFAMILY Chaperone J-domain 22 124 IPR036869 -
Lal18g0420 347 ProSiteProfiles dnaJ domain profile. 27 92 IPR001623 -
Lal18g0420 347 Coils Coil 62 82 - -
Lal18g0420 347 Gene3D - 253 331 - -
Lal18g0420 347 SMART dnaj_3 26 84 IPR001623 -
Lal18g0420 347 Gene3D DnaJ domain 24 130 IPR036869 -
Lal18g0420 347 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 346 IPR044713 GO:0006457|GO:0030544
Lal18g0420 347 Pfam DnaJ C terminal domain 140 331 IPR002939 -
Lal18g0420 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 256 340 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0420 Lal-Chr18 3537852 3542657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0420 43 89 Miscellaneous Gene Families AT5G49580 55.319 9.15e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0420 K09517 - mnt:21385493 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0420 18 3537852 3542657 Lal18g0420 18 3537852 3542657 ECH
Lal5g0240 5 2094493 2099184 Lal18g0420 18 3537852 3542657 LSH