Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0223 ATGGGTACCGAGAGGAAGAGAAAAGTGAGCTTATTCGATGTGGTAGACGACGGTGCCGCTAAGATGTTGAAATCAAATGGTGGCGCAAACAACAATAGTCTCATAAATCCATGGAATTTAAGACCTTATTCTCAAAGATACCTTGATATTTTGGAGAAGAGAAAAACTCTCCCTGTTTGGATCCAAAAAGATGAGTTTTTTAAGGCTTTGAAGGAGAATCAGACTTTGATTTTGGTTGGTGAAACTGGTAGTGGTAAAACCACACAGATCCCTCAGTTTGTTCTGGATGCCGTCGAGTTAGAAACTCCGGATAAACGCAGAAAGATGATGGTTGCATGTACTCAGCCCCGGAGAGTGGCTGCAATGTCTGTTTCCCGACGTGTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACGTCAGTAGTGCAAAGACAGTGTTGAAGTATCTCACAGATGGTATGCTCTTAAGAGAAGCAATGGCAGATCCACTTTTGGAACGGTACAAAGTAGTTATTCTTGATGAGGCACATGAAAGGACTTTGGCTACAGATGTGCTATTTGGTCTTTTGAAGGAAGTGCTTAAAAATAGACCTGACATGAAGTTGGTTGTTATGAGTGCAACTCTCGAGGCAGAAAAGTTTCAGGGCTATTTTTATGGTGCCCCTCTTATGAAAGTTCCTGGGAGGCTCCATCCTGTGGAGATTTTCTATACTCAGGAACCCGAGAGAGATTACTTGGAGGCTGCTATTAGGACAGTCGTGCAAATACACATGTGTGAGCCTCCTGGAGATATACTTGTTTTTTTGACTGGAGAGGAAGAGATAGAAGATGCATGCCGCAAAATAAACAAAGAGGTTGGAAATCTTGGTGACCAGGTGGGCCCTGTGAAAGCAGTACCTCTATATTCCACTCTTCCTCCGGCCATGCAGCAAAAGATTTTTGAACCTGCTCCACCTCCGCTCAAGGAAGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACAAACATTGCAGAAACTTCTTTAACAATTGACGGTATTGTCTATGTTATTGACCCTGGGTTTTCTAAGCAGAAGGTTTATAACCCACGAATCCGTGTTGAGTCTTTGTTAGTGTCTCCAATATCAAAAGCTAGTGCACATCAGAGGTCAGGGCGTGCGGGTAGAACTCAACCAGGGAAATGTTTTAGACTTTATACCGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACTTATCCTGAAATTTTGAGATCAAATCTGGCCAACACAGTTCTCACCTTGAAGAAGCTCGGTATAGATGATTTAGTGCATTTTGATTTCATGGATCCTCCTGCCCCTGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGCGCACTGGATGATGAGGGTAACCTAACAAAGCTCGGTGAGATAATGAGTGAGTTTCCCTTAGACCCGCAGATGTCGAAGATGCTCGTTGTCAGTCCCGAATTCAACTGTTCAAATGAGATTCTGTCAATTTCTGCCATGCTCTCAGTTGCACATGAGTGTAGTCAGTCAAGTGTCATGTTAGGTTGTCATCAGCAAATGTCTTCTCTGGGTTCCATGCCCCCGGTTGGCATGCACCAAAGGATTCTAATACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGACGAAGCGAAAGCTAGGTTTGGACACATCGATGGAGATCACCTCACACTCTTGAATGTCTACCATGCATACAAGCAAAATAATGAAGATTCCTCTTGGTGCTATGAAAACTTCATTAATCAAAGGGGACTTAAATCGGCTGATAATGTTAGACAACAACTAGTGCGTATCATGGGCCGGTTTAACCTGAAGTTATGCAGCACTGACTTTAATAGCCGCGACTACTATATCAACATAAGGAAGGCTATGCTTGCTGGATATTTTATGCAGGTTGCTCATCTGGAGCGTACAGGACACTACTTGACTGTGAAAGATAACCAGACGGTGCATTTGCATCCATCAAATTGCTTGGATCACAAGCCTGAATGGGTAATTTACAATGAATTTGTTCTCACCAGTCGAAATTTTATCCGTACTGTGACGGACATAAAGGGGGAATGGTTGGTTGATATAGCGCCACATTACTATGATCTGCAAAATTTTCCAAATTGCGAGGCCAAGCGTGTTCTTGACAAACTTTACAAGAAGCGAGAAAGGGAAAAGGATGAAGGAAAGAGTCGCAAATGA 2268 0.4339 MGTERKRKVSLFDVVDDGAAKMLKSNGGANNNSLINPWNLRPYSQRYLDILEKRKTLPVWIQKDEFFKALKENQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDVSSAKTVLKYLTDGMLLREAMADPLLERYKVVILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVGNLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVAHECSQSSVMLGCHQQMSSLGSMPPVGMHQRILIPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDSSWCYENFINQRGLKSADNVRQQLVRIMGRFNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQTVHLHPSNCLDHKPEWVIYNEFVLTSRNFIRTVTDIKGEWLVDIAPHYYDLQNFPNCEAKRVLDKLYKKREREKDEGKSRK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0223 755 PANTHER ATP-DEPENDENT RNA HELICASE 553 755 - -
Lal5g0223 755 PANTHER ATP-DEPENDENT RNA HELICASE 1 520 - -
Lal5g0223 755 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 553 755 - -
Lal5g0223 755 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 520 - -
Lal5g0223 755 CDD DEXHc_DHX15 45 235 IPR044756 GO:0003724|GO:0005524
Lal5g0223 755 CDD SF2_C_RHA 240 408 - -
Lal5g0223 755 Pfam Helicase associated domain (HA2) 462 584 IPR007502 GO:0004386
Lal5g0223 755 SMART ultradead3 54 245 IPR014001 -
Lal5g0223 755 Pfam DEAD/DEAH box helicase 65 221 IPR011545 GO:0003676|GO:0005524
Lal5g0223 755 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 646 722 IPR011709 -
Lal5g0223 755 Pfam Helicase conserved C-terminal domain 265 399 IPR001650 -
Lal5g0223 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 261 441 IPR001650 -
Lal5g0223 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 236 IPR014001 -
Lal5g0223 755 SMART ha2_5 461 585 IPR007502 GO:0004386
Lal5g0223 755 Gene3D - 445 636 - -
Lal5g0223 755 Gene3D - 12 238 IPR027417 -
Lal5g0223 755 SMART helicmild6 282 400 IPR001650 -
Lal5g0223 755 Gene3D - 239 421 IPR027417 -
Lal5g0223 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 640 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0223 Lal-Chr5 1907377 1911820 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0223 K12820 - gmx:100817506 1334.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0223 5 1907377 1911820 Lal5g0223 5 1907377 1911820 ECH
Lal5g0223 5 1907377 1911820 Lal18g0412 18 3473698 3495147 LSH