Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0206 ATGACTAACCCAACAAACCCTAATGTTGGGTTCAACCCTTCAAATCCCAAAGAAACACATAGTTCTACTCCTTCTAACATTGATAACAAGACTCCAATTTTACCACCTCCTACAAGTTTTGTAACAGCACCTAGATTTTCTTCACCAACATTGCATTTGCAAAAGCAAGATCATTCCCCAAATGTTTTGTCACCAGAAAATGGTGGGTTTAGTAAAACTGGTAGTTCTGTTGTTCCTCAATTGAGTACTCCTCCTGGACCTCCTGTTTTTACCTCGCCTGTTCGCCCCGCTGCGGTTCCATTTCGCACGTCCCCTGCATCGCCACAGCCAGTTGCTTTATCTTCAAGCTCATCTTTACCTGCATTGTCGGCTCCACAATTTTCGAATGGATCGGTTGAGTTGCAGCAGCACCGAGTTTCTGATGGTGTAATAGAAGACCATGTTTCTGATGGAGAGTCATCCTTTGTTCTTTTCTCAGCACATAAGGTGTTGAAACATAAGAAACAAGCTAATGTACCCAGTTTGGGTTTTGGAGCATTGCTCTCTCCTGGGCGAGACGTCTCAACGGGTCCTCAGGTTATACAGCGTGATCCTCATCGCTGCCAAAGCTGTGGTGCTTATGCAAATATCTATTGCAACATATTGCTTGGATCAGGGCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGGAAGCGGTGGTGAGTACATTGCACATAGCAAGGAAGTGCTCCACAGGTTTCCTGAATTGTCTTCAGCGATGGTTGACTATGTTCAAACTGGGAACAAGGGACCAAGTTTTATTCCAGTTTCGGATTCCAGAATGTCTGCCCCAGTTGTTCTTGTTATAGACGAATGTTTAGATGAACCTCACTTGCAGCATCTACAGAGCTCTTTGCATGCTTTTGTTGATTCTCTACCTCAAACAGCTAGATTAGGAATTGTACTATATGGCCGTACTGTATCAGTATATGACTTTTCAGAGGAGTCAGTTGCATCCGCTGATGTGCTTCCTGGGGACAAGTCACCGAGTCAAGAATCTTTGAAAGCATTGATTTATGGTACTGGCATATACTTGTCACCAATGCATGCTTCACTGCCTGTAGCACATGCCGTATTTTCATCATTGAGGGCATACAAGTTGAACATACCAGAAGCTTCCAGAGATCGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTTGCTATAATCCAGGGCCCATCTGCTGATTTGTCCCGAGGGATAGTCAAAAGGTCAGGGGGCAATAGTAGAATTATTGTCTGTGCCGGTGGACCAAACACTTATGGGCCTGGATCTGTTCCTCATTCCTTTAGTCACCCTAATTATCCTTATATGGAAAAGACAGCATTGAAATGGATGGAGAATCTAGGTCACAAGGCTCATCGACACAATACTGTGATAGATATTTTATGTGCTGGAACATGCCCTGTTAGAATTCCTATCTTACAGCCTCTTGCAAAATCATCAGGCGGAGTTTTGGTTCTTCACGATGATTTTGGGGAAGCCTTCGGTGTTAACTTGCAAAGGGCATCTGCTAGATCAGCAGGCTCTCATGGTTTATTAGAATTGCGCACATCAGACGATATTCTCATAACTCAAGTTGTCGGTCCTGGAGAAGAGTCACATGTAGACACCCATGAATCATTTAAAAACGATACCGCTCTTTATATCCAAATGCTGAGTGTCGAAGAAACACAAAGTTTCTCTATCTCCATGGAATCTAAAGGAGATATTAAAAGCGATTCTGTCTTTTTCCAGTTTGCAATTCAGTATTCAAATGTGTATCAAGCCGACGTGTCAAGAGTCATCACTGTTAGAATGCCAACAGTGGATAGTATTTCGGGATATATTGAGAGTGTTCAGGATGAAGTGGCTGCTGTCCTCATTGCAAAGAGAACTCTGCTACGGGCCAAAAACCATGTTGATGCAATTGATATGCGGGCAACAATAGATGAAAGAATCAAGGATATTGCTCTAAAATTTGGATCCCAATTACCCAAATCAAAACTTCATCGATTCCCAAAAGAGATTTCTCTCTTACCGGAACTCCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGCATTATTGGCCATGAAGATGAAAGGTCTGTGCTGAGGAACCTGTTTCTGAATGCATCCTTTGATCTATCACTTCGAATGTTGGCTCCTCGTTGTTTGATGCACAGGGAGGGGGGTACTTTTGAGGAGCTACCGGCTTATGATCTTGCTATGCAGTCTGATGCTGCTGTAGTACTTGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGGAGTGCTGCTGCTTTAGCCGCTTGCCGGACATTGGCTGAAGAGCTGACTGAGTTCCGTTTTCCAGCTCCTCGTATCCTTGCGTTTAAGGAGGGTAGCTCCCAGGCTCGGTACTTCGTCTCTCGTCTCATACCAGCACACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCACAACTTAGATCATTGACATCAGAACAAAGGACAAAGCTGAAAAGCAGTTTTGTTCACTTTGATGATCCTAGTTTCTTTGAATGGATGAAAAGTTTGAAAATTGTGCCACCAGAACCAAGTTGA 2634 0.4396 MTNPTNPNVGFNPSNPKETHSSTPSNIDNKTPILPPPTSFVTAPRFSSPTLHLQKQDHSPNVLSPENGGFSKTGSSVVPQLSTPPGPPVFTSPVRPAAVPFRTSPASPQPVALSSSSSLPALSAPQFSNGSVELQQHRVSDGVIEDHVSDGESSFVLFSAHKVLKHKKQANVPSLGFGALLSPGRDVSTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSGGEYIAHSKEVLHRFPELSSAMVDYVQTGNKGPSFIPVSDSRMSAPVVLVIDECLDEPHLQHLQSSLHAFVDSLPQTARLGIVLYGRTVSVYDFSEESVASADVLPGDKSPSQESLKALIYGTGIYLSPMHASLPVAHAVFSSLRAYKLNIPEASRDRCLGTAVEVALAIIQGPSADLSRGIVKRSGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTALKWMENLGHKAHRHNTVIDILCAGTCPVRIPILQPLAKSSGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHESFKNDTALYIQMLSVEETQSFSISMESKGDIKSDSVFFQFAIQYSNVYQADVSRVITVRMPTVDSISGYIESVQDEVAAVLIAKRTLLRAKNHVDAIDMRATIDERIKDIALKFGSQLPKSKLHRFPKEISLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMLAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSEQRTKLKSSFVHFDDPSFFEWMKSLKIVPPEPS 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0206 877 SUPERFAMILY Zn-finger domain of Sec23/24 188 261 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal5g0206 877 MobiDBLite consensus disorder prediction 1 94 - -
Lal5g0206 877 Pfam Sec23/Sec24 beta-sandwich domain 524 615 IPR012990 -
Lal5g0206 877 Gene3D Sec23/Sec24 helical domain 617 736 - -
Lal5g0206 877 Gene3D Severin 744 839 IPR029006 -
Lal5g0206 877 MobiDBLite consensus disorder prediction 100 119 - -
Lal5g0206 877 MobiDBLite consensus disorder prediction 1 80 - -
Lal5g0206 877 CDD gelsolin_like 730 821 - -
Lal5g0206 877 Pfam Sec23/Sec24 helical domain 629 725 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lal5g0206 877 Pfam Sec23/Sec24 zinc finger 198 232 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal5g0206 877 SUPERFAMILY vWA-like 279 511 IPR036465 -
Lal5g0206 877 Pfam Sec23/Sec24 trunk domain 280 506 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lal5g0206 877 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 63 877 IPR037364 -
Lal5g0206 877 SUPERFAMILY beta-sandwich domain of Sec23/24 36 626 - -
Lal5g0206 877 CDD trunk_domain 272 515 - -
Lal5g0206 877 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 730 870 IPR036180 -
Lal5g0206 877 SUPERFAMILY Helical domain of Sec23/24 628 728 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lal5g0206 877 Gene3D - 188 251 - -
Lal5g0206 877 Gene3D von Willebrand factor, type A domain 278 523 IPR036465 -
Lal5g0206 877 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 63 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0206 Lal-Chr5 1786694 1792050 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0206 - - lang:109329447 1648.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0206 5 1786694 1792050 Lal18g0396 18 3364347 3369443 LSH