Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0396 ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCTCTTCAAACACCCAAGAAAGACAGGGTCCAACTCTTCCTAACCCTGACAACAAGACTCCAATTCTACCTCCTCCAAGTTTTGTAACACCACCTAGGTTTCCTCCACCAACATTACATTTACAAAAGCAAGATCAAGCCTCAAATGTTTTGTCGCCAGCCAATGACGGGGTTATTAAAACTGGTAGTGGTCATGTTCCTCATTTGAGTACCCCTCCTGGACCTCCTGTTTTTACCTCACCTGTTCGTCCCGCTGCTGTTCCATTTCGCACGTCCCCTGCATCGCCTCAGCCAGTTGCCTTTTCTTCTGGCCCATCTTTACCATCATTGTCACAGCCGCAATTTTCAAATGGTTCGGATGAGTTGCAGCAGCACCGAGATTCTGATAGTATAATACAAGACCATGTCCCTGCTGAAGACTCATCCTTTGTTCTTTTCTCAGCACATAAGGTATTGAAACAGAAGAAACAAGCTAATGTACCCAGTTTAGGTTTTGGGGCATTGCTCTCTCCTGGGAGGGAGATCTCGACCGGACCACAAGTAATACAGCGTGATCCCCATCGCTGCCAAATTTGTGGTGCTTATGCAAATATCTATTCCAATATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTTTATGTCGGAAACTGAATGGAAGTGGTGGTGAGTATATTGCGTATAACAAGGAAGAGCTTCACAGATTTCCTGAACTATCTTCACCCATGGTTGACTATGTTCAAACTGGGAACAAGGGGCCTAGTTTTGTTCCTGTTTCGGATTCCAGAATGTCTGCCCCAGTTGTTCTTGTTATAGATGAATGTTTAGATGAACCCCACTTGCAGCATCTACAGAGCTCTTTGCATGCTTTTGTTGATTCTCTCCCTCCAACCACAAGATTAGGAATTGTACTATATGGTCGTACTGTATCAGTATATGACTTTTCAGAAGAGTCAGTTGCATCTGCTGATGTGCTTCCCGGGGACAAGTCACCAAGTCAAGAATCTTTGAAAGCACTGATTTATGGTACTGGCATATACTTATCACCAATGCATGCTTCATTGCCTGTAGCACATTCTATATTTTCATCATTGAGGGCATACAAGTTGAACATACCAGAAGCTTCCAGAGATAGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGCCCATCAGCTGATCTGTCCCGAGGGATAGTCAAAAGGTTAGGGGGAAATAGTAGAATTATTGTCTGTGCCGGTGGACCCAACACTTATGGTCCTGGATCTGTTCCACATTCTTTTAGTCACCCTAATTATCCTTATATGGAAAAGACAGCATTAAAATGGATGGAGAGTCTAGGTCGTGAGGCTCATCGACACAATACTGTGGTAGATATTTTATGTGCTGGAACATGCCCTGTGAGAATTCCTATCTTACAGCCTCTTGCAAAATCATCCGGTGGAGTTTTGGTTCTTCATGATGATTTTGGGGAAGCGTTTGGTGTTAATTTGCAAAGGGCATCTGCTAGATCAGCTGGCTCTCTTGGTTTGTTAGAATTGCGAACATCAGATGATATTCTCATAACTCAAGTTGTGGGTCCCGGGGAAGAGTCACATGTAGATACCCATGAATCATTTAAAAATGACACTGCTCTTTATATTCAAATGCTGAGTGTTGAAGAAGCACAGTGCTTCTCTATCTCCATGGAAACTAAAGGAGATATTAAAAGGGATTCTGTCTTTTTCCAGTTTGCAATTCAGTATTCAAATGTGTATAAAGCTGACGTGTCAAGGGTTGTCACTGTTAGACTGCCAACAGTAGATAGTATTTCAGGATATCTTCAGAGTGTTCAGGATGAAGTGGCCGCTGTCCTCATTGCAAAGAAAACTCTGTTACGGGCCAAAAACCAGTCCGATGCAATTGATATGCGAGCAACAATAGATGAAAGAATCAAGGATATTGCTCTAAAATTTGGATCCCAATTACCCAAATCAAAACTTCATCGCTTCCCAAACGAGATTACTCTCTTACCGGAACTTCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGCATTATTGGCCACGAAGATGAAAGGTCTGTGCTGAGGAACCTGTTTCTGAATGCATCCTTTGATCTATCACTTCGAATGCTGGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCGGCTTATGATCTTGCTATGCAGTCTGATGCTGCTGTAGTGCTTGACCACGGCACTGATGTCTTCATTTGGTTGGGTGCTGAAGTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTTTAGCTGCTTGCCGGACATTGGCAGAAGAGTTGACCGAGTTCCGTTTTCCAGCTCCTCGTATCCTTGCATTTAAGGAAGGTAGCTCCCAGGCTCGATACTTTGTCTCTCGTCTCATACCAGCACATAAGGATCCTCCTTATGAACAGGAAGCGAGATTCCCACAACTTAGGTCATTGACACAAGAAAAGCGGACGAAGCTGAAAAGCAGTTTTGTTCACTTTGACGATCCTAGTTTCTGTGAGTGGATGCGAAGTTTGAGAGTGGTGCCACCCGAACCACGCTGA 2631 0.4428 MANPTQPNVGFTSSNTQERQGPTLPNPDNKTPILPPPSFVTPPRFPPPTLHLQKQDQASNVLSPANDGVIKTGSGHVPHLSTPPGPPVFTSPVRPAAVPFRTSPASPQPVAFSSGPSLPSLSQPQFSNGSDELQQHRDSDSIIQDHVPAEDSSFVLFSAHKVLKQKKQANVPSLGFGALLSPGREISTGPQVIQRDPHRCQICGAYANIYSNILLGSGQWQCVLCRKLNGSGGEYIAYNKEELHRFPELSSPMVDYVQTGNKGPSFVPVSDSRMSAPVVLVIDECLDEPHLQHLQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDFSEESVASADVLPGDKSPSQESLKALIYGTGIYLSPMHASLPVAHSIFSSLRAYKLNIPEASRDRCLGTAVEVALAIIQGPSADLSRGIVKRLGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTALKWMESLGREAHRHNTVVDILCAGTCPVRIPILQPLAKSSGGVLVLHDDFGEAFGVNLQRASARSAGSLGLLELRTSDDILITQVVGPGEESHVDTHESFKNDTALYIQMLSVEEAQCFSISMETKGDIKRDSVFFQFAIQYSNVYKADVSRVVTVRLPTVDSISGYLQSVQDEVAAVLIAKKTLLRAKNQSDAIDMRATIDERIKDIALKFGSQLPKSKLHRFPNEITLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMLAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAEVAADEGRSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTQEKRTKLKSSFVHFDDPSFCEWMRSLRVVPPEPR 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0396 876 SUPERFAMILY Helical domain of Sec23/24 627 727 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lal18g0396 876 MobiDBLite consensus disorder prediction 28 49 - -
Lal18g0396 876 Pfam Sec23/Sec24 trunk domain 279 505 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lal18g0396 876 MobiDBLite consensus disorder prediction 1 138 - -
Lal18g0396 876 CDD trunk_domain 271 514 - -
Lal18g0396 876 Pfam Sec23/Sec24 helical domain 628 724 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lal18g0396 876 Gene3D Sec23/Sec24 helical domain 616 735 - -
Lal18g0396 876 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 62 875 IPR037364 -
Lal18g0396 876 CDD gelsolin_like 729 820 - -
Lal18g0396 876 Gene3D - 187 250 - -
Lal18g0396 876 Pfam Sec23/Sec24 zinc finger 197 231 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal18g0396 876 SUPERFAMILY beta-sandwich domain of Sec23/24 36 625 - -
Lal18g0396 876 MobiDBLite consensus disorder prediction 52 67 - -
Lal18g0396 876 Pfam Sec23/Sec24 beta-sandwich domain 525 614 IPR012990 -
Lal18g0396 876 MobiDBLite consensus disorder prediction 106 132 - -
Lal18g0396 876 SUPERFAMILY vWA-like 278 510 IPR036465 -
Lal18g0396 876 MobiDBLite consensus disorder prediction 1 27 - -
Lal18g0396 876 Gene3D von Willebrand factor, type A domain 277 523 IPR036465 -
Lal18g0396 876 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 729 869 IPR036180 -
Lal18g0396 876 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 62 875 - -
Lal18g0396 876 SUPERFAMILY Zn-finger domain of Sec23/24 188 260 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lal18g0396 876 Gene3D Severin 741 838 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0396 Lal-Chr18 3364347 3369443 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0396 - - lang:109329447 1563.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0206 5 1786694 1792050 Lal18g0396 18 3364347 3369443 LSH