Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0194 ATGGCGAAAGAACCAGAACAAGTTATGAAGATGAGAAAAGGTTCAGTTCTTGGCAAAAAAACAATTCTCAAAACCGATCATTTCCCTGGTTGTCAGAACAAACGTCTTTTTCCTCAAATTGATGGTGCTCCCAATTATCGTCAGGCTGAATCATTGCATGTTCATGGTGTTGCAATCCCTACAATTGATGGAATCATAAATGTTCTTAAGCATATTGGTGCTCAATTCAAAGCTAAAGTTCTTTGGATTAGTCTTCGTGAAGAACCTCTTGTGTATATTAATGGTCGCCCGTTTGTTTTGCGTGATGTGGAGAGACCATTCTCCAACCTCGAGTATACGGGAATTAATAGAGAAAGAGTTGAGCAGATGGAAGATCGTTTGAAAGAAGACATCCTCATGGAAGCTGGAAGATATGAAAATAAGATCCTTGTCACTGATGAGCTCCCAGATGGTCAGATGGTGGACCAATGGGAACCAGTGTCGTCTAATTCTGTGAAGACGCCGCTCGAGGTGTATGAAGAATTGCAAGTGGAGGGATACCTTGTCGATTACGAGCGTGTTCCTGTAACTGATGAAAAATCACCAAAGGAACGGGATTTTGATATTTTGGTACAAAAAATTTCTCAAGCTGATGTAAATACAGAGATAGTTTTTAACTGTCAAATGGGGCGTGGACGAACGACAACTGGAATGGTCGTTGCAACTTTGGTTTACTTCAACAGAATTGGAGCCTCTGGGATTCCAAGAAGCAATTCAATTGGTAGAATTTCTCAGTTTATGACCAAAGCAGCTGATCGTTTGCCTAACTCAGAGGAGGCAATTCGCAGGGGAGAATATGTAGTCATAAGAAGCTTGATTCGGGTGTTAGAGGGTGGCGTTGAGGGAAAAAGACAAGTGGACAAAGTCATTGACATGTGTGCTTCAATGCAGAACTTGCGGGAAGCAATTGCCACCTACCGCAGTAGTATTCTGCGGCAACCAGATGAGATGAAAAGGGAGGCATCACTTTTCTTTTTTGTGGAATACTTAGAGAGATACTACTTTTTAATATGTTTTGCTGTGTACTTGCATTCGGAAGGGGCTGTACTCCTTTCTAGTACTGCTACTCAGAGTAGTTTTGCTGACTGGATGAGAGCGAGGCCTGAACTCTACAGTATCCTTCGCAGGTTACTCAGGAGAGATCCAATGGGTGCACTTGGATATTCAAGTTCAAAACCATCTCTGAAGAAGATATCTGAGTCTTCTGATGGCCGTCCTTCTGAGATGGGTGTGGTTGCTGCCTTGAGAAGCGGTGAGGTTCTTGGTAGTCAAACGGTTCTAAAAAGCGATCACTGTCCTGGGTGTCATAGCCAGAGTTTACCTGAGAGAGTTGATGGGGCTCCTAATTTCCGTGAAGTTCCTGGTTTTCCAGTTTATGGGGTCGCGAATCCAACTATCGATGGTATTCGATCTGTCCTTCATAGGATAGGTACCTCTAAAGGTGGACGCCCAGTACTTTGGCATAATATGAGGGAAGAACCTGTTATTTACATTAATGGGAAGCCATTTGTCCTTCGCGAAGTTGAAAGACCATATAAAAACATGCTGGAGTACACGGGAATTGACCGTGAAAGAGTGGAGAAAATGGAAGCTCGGTTAAAAGAAGATATCCTTCGGGAAGCTAAACAATATGACAGTGCCATTATGGTTATTCACGAAACAGATGATGGGCATATATTTGATACCTGGGAGCATGTTACTCCAGATGTGATTCAAACCCCACTTGAAGTTTTTAAAAGCCTGGAGGCTGATGGGTTTCCCATTAAGTATGCACGTGTCCCCATCACTGATGGAAAAGCTCCTAGAAGTTCTGACATTGACACTTTGACAACTAATATTGCTTCTGCTGTCAAGGACACTGCTTTTGTTTTCAATTGTCAGATGGGCAGGGGCAGGACAACCACTGGTACTGTCATTGCTTGCCTTGTGAAACTTCGAATTGATAATGGTAGGCCCATTAAAATACTAAGTGATGATGTGACTCATGAAGCATCAGATGGTGGTTTCTCAAGTGGAGATGAAGCTGGAGGGTATGTCACTGCAACTGCATTGACCTCCGATACTTCACAAATACAGACATATGAGAAACAGAATCATGTTTTTGGGATAAACGACATCCTCCTATTGTGGAAGATAACAACTTTATTTGATAACGGTGTTGAATGCCGAGAGGCCTTAGATGCTATTATTGATAGATGTTCTTCACTTCAAAACATTCGGCAAGCTGTTCTTCAATATCGAAAAGTATTCAATCAACAGCATGTTGAGCCTAGAGTGAGGAGGGTGGCATTAAGTCGTGGTGGTGAGTACTTAGAGCGCTACTTCCGTCTAATTGCTTTTGCAGCATATCTTGGGAGTGAAGCCTTTGATGGCTTTTGTGGACATGGAGAATCCAAAATGACATTTAAGAATTGGTTGCATCAGAGGCCAGAGGTGCAGGCTATGAAATGGAGCATCAGATTAAGACCAGGGCGATATTTCACTGTCCCGGAAGAGTTAAGAAAACCACAAGAGTCTCAACACGGAGATGCTGTGATGGAGGCCATTGTCAAGGCCCGTAATGGATCTGTTCTAGGGAAAGGCTCCATACTGAAAATGTATTTCTTTCCTGGTCAGACAACTTCCAGTCACATACAAATACATGGTGCACCACATGTTTTCAAGGTTAATGAATACCCTGTGTATAGCATGGCAACTCCAACCATCTCTGGTGCGAAGGAGATGCTAACTTATTTGGATACTAAGTCTAATGCCTCCTTGACTGCTCGAAAAGTTATATTGACGGATCTGAGAGAAGAAGCAGTTGTTTATATCAATGGTACTCCTTTTGTCCTGAGGGAGTTAAACAAACCTTCTGATACACTCAAGCATGTGGGAATCACTGGTCCTTTGGTGGAACACATGGAAGCACGGCTGAAAGCAGATATACTAGCAGAGATTAAACAGTCTGGTGGGAGAATGTTATTGCACCGTGAAGAGTATAACCCTTCAACGAATGAGTCTGCCGTGGTTGGATACTGGGAAAACATTTTAGCAGATGATGTGAAGACACCTGCGGAAGTTTATTCTGTTCTGAAAGATGATGGATATGATATAATCTACCGGAGGATACCCTTAACAAGGGAGAGAGATGCTTTAGCCTCTGACGTTGATGCAATTCAATACTGTAAAGATGACTCTGCGGGGAGTTACCTTTTTGTATCACACACAGGTTTTGGTGGAGTCGCATATGCAATGGCCATGATCTGTATCAGACTTGCTGCAGAGGCCAATTTTGCATCTAAAGTCCCACAGCCATTGGTTGGTCCTGACATATCTGCTGTGACTGAGAAGAACTTGCCATCTCGAGCTTCAAATGAAACAGCGCTCAAGATGGGTGACTATCGTGACATTTTAAGCCTTACAAGAGTCCTCATACATGGCCCCCAAAGCAAAGCAGATGCTGACATTGCTATTGAAAGGTGTGCAGGCGCGGGGCACATTCGAGACGATATTCTTCATTACAGAAAAGAATTTGAGAAGTTTACTGACAATGACGATGAGGAACGTGCATATTTTATGGACATGGGTATTAAGGCTCTGAGGCGGTATTTTTTCCTTATCACATTCAGATCTTACCTATACAGCACCTCTCCTGCAAACATGAAATTTGGTGCATGGATGAATGCAAGACCAGAGCTTGGCCATCTATGTAACAATCTAAGGATTGATAAATAA 3756 0.4284 MAKEPEQVMKMRKGSVLGKKTILKTDHFPGCQNKRLFPQIDGAPNYRQAESLHVHGVAIPTIDGIINVLKHIGAQFKAKVLWISLREEPLVYINGRPFVLRDVERPFSNLEYTGINRERVEQMEDRLKEDILMEAGRYENKILVTDELPDGQMVDQWEPVSSNSVKTPLEVYEELQVEGYLVDYERVPVTDEKSPKERDFDILVQKISQADVNTEIVFNCQMGRGRTTTGMVVATLVYFNRIGASGIPRSNSIGRISQFMTKAADRLPNSEEAIRRGEYVVIRSLIRVLEGGVEGKRQVDKVIDMCASMQNLREAIATYRSSILRQPDEMKREASLFFFVEYLERYYFLICFAVYLHSEGAVLLSSTATQSSFADWMRARPELYSILRRLLRRDPMGALGYSSSKPSLKKISESSDGRPSEMGVVAALRSGEVLGSQTVLKSDHCPGCHSQSLPERVDGAPNFREVPGFPVYGVANPTIDGIRSVLHRIGTSKGGRPVLWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVEKMEARLKEDILREAKQYDSAIMVIHETDDGHIFDTWEHVTPDVIQTPLEVFKSLEADGFPIKYARVPITDGKAPRSSDIDTLTTNIASAVKDTAFVFNCQMGRGRTTTGTVIACLVKLRIDNGRPIKILSDDVTHEASDGGFSSGDEAGGYVTATALTSDTSQIQTYEKQNHVFGINDILLLWKITTLFDNGVECREALDAIIDRCSSLQNIRQAVLQYRKVFNQQHVEPRVRRVALSRGGEYLERYFRLIAFAAYLGSEAFDGFCGHGESKMTFKNWLHQRPEVQAMKWSIRLRPGRYFTVPEELRKPQESQHGDAVMEAIVKARNGSVLGKGSILKMYFFPGQTTSSHIQIHGAPHVFKVNEYPVYSMATPTISGAKEMLTYLDTKSNASLTARKVILTDLREEAVVYINGTPFVLRELNKPSDTLKHVGITGPLVEHMEARLKADILAEIKQSGGRMLLHREEYNPSTNESAVVGYWENILADDVKTPAEVYSVLKDDGYDIIYRRIPLTRERDALASDVDAIQYCKDDSAGSYLFVSHTGFGGVAYAMAMICIRLAAEANFASKVPQPLVGPDISAVTEKNLPSRASNETALKMGDYRDILSLTRVLIHGPQSKADADIAIERCAGAGHIRDDILHYRKEFEKFTDNDDEERAYFMDMGIKALRRYFFLITFRSYLYSTSPANMKFGAWMNARPELGHLCNNLRIDK 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0194 1251 CDD PTP_paladin 12 306 - -
Lal5g0194 1251 Gene3D Protein tyrosine phosphatase superfamily 880 1109 IPR029021 -
Lal5g0194 1251 Gene3D Protein tyrosine phosphatase superfamily 438 674 IPR029021 -
Lal5g0194 1251 Gene3D Protein tyrosine phosphatase superfamily 21 284 IPR029021 -
Lal5g0194 1251 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 861 1084 IPR029021 -
Lal5g0194 1251 SMART PTPlike_phytase_2 501 657 - -
Lal5g0194 1251 SMART PTPlike_phytase_2 83 238 - -
Lal5g0194 1251 SMART PTPlike_phytase_2 941 1099 - -
Lal5g0194 1251 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 425 658 IPR029021 -
Lal5g0194 1251 PANTHER METAL ION-BINDING PROTEIN 335 479 - -
Lal5g0194 1251 PANTHER METAL ION-BINDING PROTEIN 2 334 - -
Lal5g0194 1251 PANTHER METAL ION-BINDING PROTEIN 598 1251 - -
Lal5g0194 1251 PANTHER METAL ION-BINDING PROTEIN 421 599 - -
Lal5g0194 1251 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 7 242 IPR029021 -
Lal5g0194 1251 CDD PTP_paladin 429 746 - -
Lal5g0194 1251 Pfam Inositol hexakisphosphate 501 657 - -
Lal5g0194 1251 Pfam Inositol hexakisphosphate 942 1097 - -
Lal5g0194 1251 Pfam Inositol hexakisphosphate 83 237 - -
Lal5g0194 1251 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 2 334 - -
Lal5g0194 1251 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 335 479 - -
Lal5g0194 1251 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 421 599 - -
Lal5g0194 1251 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 598 1251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0194 Lal-Chr5 1685527 1695464 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0194 - - gmx:100788460 2172.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0194 5 1685527 1695464 Lal5g0194 5 1685527 1695464 ECH
Lal5g0194 5 1685527 1695464 Lal18g0394 18 3344059 3355688 LSH