Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0394 ATGTCTGTAATTCCAAAAGAACCAGAACAAGTAATGAAGATGAGAGGAGGTTCAGTTCTTGGCAAAAAAACCATTCTCAAAACTGACCATTTCCCTGGTTGTCAGAATAAACGTCTTTCTCCTCAGATCGATGGTGCTCCCAATTATCGTCAGGCTGAATCATTACATGTTCATGGTGTTGCTATCCCTACAATTGATGGAATCACAAATGTTCTTAATCATGTTGGTGCTCAATTACATGCTAAAGTTCTTTGGATTAGTCTTCGTGAAGAACCTCTTGTGTATATTAATGGTCGCCCCTTTGTTTTGCGTGATGTGGAGAGACCATTCTCCAACCTCGAGTATACGGGAATTAATAGGGAAAGAGTTGAGCAGATGGAAGATCGTTTGAAAGAAGACATCCTCATGGAAGCTGCAAGATATGGAAATAAGATCCTTGTGACGGATGAGCTCCCAGATGGTCAGATGGTGGACCAATGGGAACCAGTATCGTCTAGTTCTGTGAAGACACCACTCGAGGTGTACGAGGAATTGCAAGTGGAGGGATACCTTGTCGACTATGAACGTGTTCCCGTAACTGATGAAAAATCACCTAAGGAACTGGATTTTGATATTTTGGTCCAAAAAATTTCTCAAGCTGATGTAAATACAGAGATAATTTTTAACTGTCAAATGGGTCGGGGACGAACTACAACAGGAATGGTCATTGCAACTTTGGTTTACTTCAACCGAATTGGGGCCTCTGGGATTCCAAGAAGCAATTCTATTGGTAGAATTTCTCAATTTATGACCAACGTCGCTGATCGTTTGCCTAACTCGGAGGAGGCAATTCGCCGGGGAGAATATGTAGTCATAAGAAGCTTGATTCGGGTGTTAGAGGGTGGTGTTGAGGGAAAAAGACAAGTGGACAAAGTCATTGACAAGTGTGCTTCAATGCAGAACTTGCGTGAAGCAATTGCTACCTACCGCAATAGTATTCTGCGGCAACCAGATGAAATGAAAAGGGAGGCGTCACTTTCCTTTTTTGTGGAATACTTAGAGAGATATTACTTTCTAATATGTTTTGCTGTGTACTTGCATTCAGAAAGGGCTGTGCTCCTTTCTAGTACTTCTACTCAGAGTAGTTTTGCTGATTGGATGAGAGCAAGGCCTGAACTCTACAGTATCCTCCGCAGGTTACTCAGGAGAGATCCAATGGGTGCACTTGGATATTCAAGTTCAAAACCATCTCTAAAGAAGATAGCTGAATCTACTGATGGCCGCCCTTCTGAGATGGGAGTGGTTGCTGCCTTGAGAAATGGTGAGGTTCTTGGTAGTCAAACTGTGCTAAAAAGTGATCACTGTCCTGGATGTCAAAACCCAAGTTTACCTGAGAGAGTGGATGGGGCTCCTAATTTCCGTGAAGTTCCTGGTTTTCCAGTTTATGGGGTGGCAAATCCAACTATTGATGGTATTCGATCTGTCCTTCATAGGATTGGTACCTCTAAAGGTGGACGCCCAGTACTTTGGCATAATATGAGGGAAGAACCTGTTATTTACATTAATGGGAAGCCATTTGTTCTTCGTGAAGTTGAAAGACCATACAAAAACATGCTGGAGTACACGGGAATTGACCGTGAAAGAGTGGAGAAAATGGAAGCTCGACTAAAAGAAGATATCCTACGTGAAGCTAAACAATATGACAGTGCCATTATGGTTATTCATGAAACAGATGATGGGCATATATTTGATACCTGGGAGCATGTCACCCCTGAGGTGATTCAAACCCCACTTGAAGTTTTTAAAAGCCTAGAGGCTGATGGGTTTCCCATTAAGTATGCACGTGTCCCCATCACTGATGGAAAAGCTCCTAAAAGTTCTGACATTGACACTTTGACAACTAACATTGCTTCTGCTGCTAAGGACACTGCTTTTGTTTTCAATTGTCAGATGGGTCGGGGCAGGACAACCACTGGTACTGTCATAGCATGCCTTGTGAAACTTCGAATTGATTATGGTAGGCCCATTAAAATACTAAGTGGTGATGTGACCCATGAAGCATCAGATGGTGGTTTTTCAAGTGGAGATGAAGCTGGAGGGTATGTCACTGCAACTGCATTAACCTCCAATACTTTGCAGATAAAGACAGATGAGACACAGAATCGTGTTTTTGGGATAAATGACATCCTCTTATTATGGAAGATAACAACATTATTTGATAATGGTGTTGAATGCCGAGAGGCCTTAGATGCTATTATTGATAGATGTTCTGCACTTCAAAACATTCGTCAAGCTGTTCTGCAATATCGAAAAGTATTCAATCAACAGCATGTTGAGCCTAGGGTGAGGAGGGTGGCATTAAATCGTGGTGGCGAGTATCTAGAGCGCTACTTCCGTCTAATTGCTTTTGCAGCATATCTTGGAAGTGAAGCCTTTGATGGGTTTTGTGGGCATGGAGAATCTAAAATGACATTTAAGAATTGGATGCATCAGAGGCCAGAGGTGCAGGCTATGAAATGGAGCATCAGATTAAGACCAGGGCGATATTTCTCTGTCCCTGAAGAGTTGAGAAAGCCACAAGAGTCTCAGCATGGAGATGCTGTGATGGAGGCCATTGTCAAGGCCCGTAATGGATCTGTTCTGGGGAAAGGCTCCATACTGAAAATGTATTTCTTTCCTGGTCAGAGAACTTCCAGTCACATACAAATACACGGTGCACCACATGTTTTCAAGGTTAATGAATACCCCGTGTATAGCATGGCAACTCCAACCATCTCTGGTGCAAAGGAGATGCTAGCTTATTTGGATGCTAAGCCTAAAGCCTCCTTGACAGCTCGAAAAGTCATATTGACTGATCTGAGAGAGGAAGCAGTTGTTTATATCAATGGTACTCCCTTTGTCCTGAGGGAGTTAAACAAACCTGTTGATACACTCAAGCATGTGGGAATCACTGGTCCTTTGGTGGAACACATGGAAGCACGGCTGAAAGAAGATATACTAGCTGAGATTAGACAGTCTGGTGGGCGAATGCTATTGCACCGTGAAGAATATAACCCTTCAACAAATCAGTCTGATGTGGTTGGATACTGGGAAAACATTTTGGCAGATGATGTGAAGACACCTGCGGAAGTTTATTCTGTTCTGAAAGATGATGGATATGATATAGTCTATCGGCGGATACCCTTAACCAGGGAGAGAGATGCTTTGGCTTCTGATATTGATGCAATACAATACTGTAAAGATGACTCCGCGGGGAGTTACCTTTTTGTATCACACACAGGTTTTGGTGGAGTCGCGTATGCAATGTCCATCATCTGTATCAGACTTAGTGCAGAGGCCAATTTTGCATCTAAAGTCCCACAGCCATTGTTTGGTCCGGACATATCTTCTGTGATTGAGGAGAACTTGCCATCCCGAGCTTCTAATGAAGCAGCACTCAAGATGGGTGACTATCGTGACATTTTAAGCCTTACAAGAGTCCTCATACATGGTCCCCAAAGCAAAGCAGATGCTGACATTGTCATTGAAAGATGTGCAGGCGCAGGGCACATACGAGATGATATTCTTTATTACAGTAAAGAATTTGAGAAGTTTACTGATGATGATGACGAGGAACGTGCATATTTTATGGACATGGGTATTAAGGCTTTGAGGCGATATTTTTTCCTTATCACATTCAGATCTTATCTCTACAGCACCTCTCCGACTAATACAAAATTTGCTGCATGGATGGATGCAAGACAAGAGCTTGGTCATCTATGCTACAATCTAAGAATTGATAAATAA 3765 0.4258 MSVIPKEPEQVMKMRGGSVLGKKTILKTDHFPGCQNKRLSPQIDGAPNYRQAESLHVHGVAIPTIDGITNVLNHVGAQLHAKVLWISLREEPLVYINGRPFVLRDVERPFSNLEYTGINRERVEQMEDRLKEDILMEAARYGNKILVTDELPDGQMVDQWEPVSSSSVKTPLEVYEELQVEGYLVDYERVPVTDEKSPKELDFDILVQKISQADVNTEIIFNCQMGRGRTTTGMVIATLVYFNRIGASGIPRSNSIGRISQFMTNVADRLPNSEEAIRRGEYVVIRSLIRVLEGGVEGKRQVDKVIDKCASMQNLREAIATYRNSILRQPDEMKREASLSFFVEYLERYYFLICFAVYLHSERAVLLSSTSTQSSFADWMRARPELYSILRRLLRRDPMGALGYSSSKPSLKKIAESTDGRPSEMGVVAALRNGEVLGSQTVLKSDHCPGCQNPSLPERVDGAPNFREVPGFPVYGVANPTIDGIRSVLHRIGTSKGGRPVLWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVEKMEARLKEDILREAKQYDSAIMVIHETDDGHIFDTWEHVTPEVIQTPLEVFKSLEADGFPIKYARVPITDGKAPKSSDIDTLTTNIASAAKDTAFVFNCQMGRGRTTTGTVIACLVKLRIDYGRPIKILSGDVTHEASDGGFSSGDEAGGYVTATALTSNTLQIKTDETQNRVFGINDILLLWKITTLFDNGVECREALDAIIDRCSALQNIRQAVLQYRKVFNQQHVEPRVRRVALNRGGEYLERYFRLIAFAAYLGSEAFDGFCGHGESKMTFKNWMHQRPEVQAMKWSIRLRPGRYFSVPEELRKPQESQHGDAVMEAIVKARNGSVLGKGSILKMYFFPGQRTSSHIQIHGAPHVFKVNEYPVYSMATPTISGAKEMLAYLDAKPKASLTARKVILTDLREEAVVYINGTPFVLRELNKPVDTLKHVGITGPLVEHMEARLKEDILAEIRQSGGRMLLHREEYNPSTNQSDVVGYWENILADDVKTPAEVYSVLKDDGYDIVYRRIPLTRERDALASDIDAIQYCKDDSAGSYLFVSHTGFGGVAYAMSIICIRLSAEANFASKVPQPLFGPDISSVIEENLPSRASNEAALKMGDYRDILSLTRVLIHGPQSKADADIVIERCAGAGHIRDDILYYSKEFEKFTDDDDEERAYFMDMGIKALRRYFFLITFRSYLYSTSPTNTKFAAWMDARQELGHLCYNLRIDK 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0394 1254 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 864 1067 IPR029021 -
Lal18g0394 1254 Gene3D Protein tyrosine phosphatase superfamily 881 1107 IPR029021 -
Lal18g0394 1254 Gene3D Protein tyrosine phosphatase superfamily 443 669 IPR029021 -
Lal18g0394 1254 Gene3D Protein tyrosine phosphatase superfamily 24 286 IPR029021 -
Lal18g0394 1254 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 601 1254 - -
Lal18g0394 1254 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 342 482 - -
Lal18g0394 1254 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 1 337 - -
Lal18g0394 1254 PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE 424 602 - -
Lal18g0394 1254 CDD PTP_paladin 432 749 - -
Lal18g0394 1254 CDD PTP_paladin 15 309 - -
Lal18g0394 1254 PANTHER METAL ION-BINDING PROTEIN 1 337 - -
Lal18g0394 1254 PANTHER METAL ION-BINDING PROTEIN 424 602 - -
Lal18g0394 1254 PANTHER METAL ION-BINDING PROTEIN 601 1254 - -
Lal18g0394 1254 PANTHER METAL ION-BINDING PROTEIN 342 482 - -
Lal18g0394 1254 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 428 661 IPR029021 -
Lal18g0394 1254 SMART PTPlike_phytase_2 86 241 - -
Lal18g0394 1254 SMART PTPlike_phytase_2 944 1102 - -
Lal18g0394 1254 SMART PTPlike_phytase_2 504 660 - -
Lal18g0394 1254 Pfam Inositol hexakisphosphate 945 1100 - -
Lal18g0394 1254 Pfam Inositol hexakisphosphate 86 240 - -
Lal18g0394 1254 Pfam Inositol hexakisphosphate 504 660 - -
Lal18g0394 1254 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 9 245 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0394 Lal-Chr18 3344059 3355688 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0394 - - gmx:100788460 2239.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0394 18 3344059 3355688 Lal18g0394 18 3344059 3355688 ECH
Lal5g0194 5 1685527 1695464 Lal18g0394 18 3344059 3355688 LSH