Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0193 ATGTCTTTGTTTGAAGCAACCTATATCCATGGGGCAGAACCAGAACACCTTACTAGTTTAAAGCTTAAATCTCCTATTCTACAGGAGTCTATTGCTAAACAGATTAATGAAAATCCAGAGGCAGGATGGGAGGCTGCTATTAATCCTCGTTTCTCCAATTTTACGGTTGCAGAATTTAAACGGCTTCTTGGATTAAAGAAAACATTGAGGAAGGAACTGACTAGTACGCCTGTTATAACTCATCCTAAATCGTTGAAATTGCCGAAGAATTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACTATTGGTAGAATTCTAGGTCATTCACTTGCTCCTTGTCCTTCATTTTTTTTCATAATAAAATTGGTCACTGTGGTTCTTGTTGGGCATTTGGAGCTGTTGAATCATTACAAGATCAATATCACTCTCTCTGTTAATGATCTTCTCGCATGCTGTGGCTTTTTGTGCGGAGATGGTTGTGATGGGGGAGAACCTCTATATGCATGGCGATACTTAAGCAATCACGGTGTTGTTACTGAAGAGTGTGACCCATACTTCGATCAAATTGGCTGCGCTCACCCTGGTTGTGAGCCATCATATCAAACTCCCAAGTGTGTTAAAAAGTGTGTGAGTCGGAACTTGCTTTGGAAGAGATCAAAGCACTATAGTGTCAGTGCATACAGGGTCGAATCTGATCCGTATGATATCATGGCAGAAGTTTATAAGAACGGTCCCGTTGAAGTTGGGTTTACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACATGTCACAGGTGTTGCACTTGGTGGCCATGCTGTAAAGCTCATTGGGTGGGGAAGAAGTGATAATGGGGATGACTACTGGCTTCTTGCAAACCAATGGAATAGAAGCTGGGGAGATGATGGATACTTCAAGATCAAAAGAGGAACAAATGAATGTGGGATTGAAGATGATATTACTGCTGGTTTACCTTCAACCAAAAATTTCATAAGAGAGGTGACTGATATGGATACTGATTTTGATGTTTCATTCTGA 1050 0.4086 MSLFEATYIHGAEPEHLTSLKLKSPILQESIAKQINENPEAGWEAAINPRFSNFTVAEFKRLLGLKKTLRKELTSTPVITHPKSLKLPKNFDARTAWSQCSTIGRILGHSLAPCPSFFFIIKLVTVVLVGHLELLNHYKINITLSVNDLLACCGFLCGDGCDGGEPLYAWRYLSNHGVVTEECDPYFDQIGCAHPGCEPSYQTPKCVKKCVSRNLLWKRSKHYSVSAYRVESDPYDIMAEVYKNGPVEVGFTVYEDFAHYKSGVYKHVTGVALGGHAVKLIGWGRSDNGDDYWLLANQWNRSWGDDGYFKIKRGTNECGIEDDITAGLPSTKNFIREVTDMDTDFDVSF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0193 349 SMART pept_c1 87 328 IPR000668 GO:0006508|GO:0008234
Lal5g0193 349 SUPERFAMILY Cysteine proteinases 32 329 IPR038765 -
Lal5g0193 349 Pfam Papain family cysteine protease 134 326 IPR000668 GO:0006508|GO:0008234
Lal5g0193 349 PANTHER CATHEPSIN B-LIKE PROTEASE 3 8 335 - -
Lal5g0193 349 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 8 335 - -
Lal5g0193 349 CDD Peptidase_C1A_CathepsinB 88 327 - -
Lal5g0193 349 Gene3D Cysteine proteinases 18 335 - -
Lal5g0193 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 274 284 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0193 Lal-Chr5 1678343 1682819 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0193 K01363 - gmx:100788988 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0193 5 1678343 1682819 Lal5g0193 5 1678343 1682819 ECH
Lal5g0193 5 1678343 1682819 Lal18g0393 18 3337349 3342462 LSH