Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0393 ATGATTTCAATAAGTTGCAGGGTTGAAATTGGAGAAATGGGTTTCAGTTTTGTGCCCTTTGCGATTTTGATCTTAGCTTTCTCTTCTTCTTTTCTCAACATCGCTTGGGCTGAAACTGAACAACAACACCTTCCTATTTCAATCCTTAATTCTCCTATTCTCAAGGAGTCTATTGCTAAACAGATTAATGAAAATCCAGAGGCAGGATGGGAGGCTGCTATCAATCCTCGTTTCTCCAATTTCACAGTTGCTCAATTTAAGCGCCTTCTTGGAGTCAAAAAATCTTCCAGGAGGGAACTGACTAGTACACCTGTTATAACTCATCCTAAATCATTGAAATTGCCAAAGAATTTTGATGCAAGGACAGCTTGGTCACAGTGTATCACCATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCTTTACAAGATCGCTTTTGTATTCATTTCGACGTGAATGTCACTCTCTCTGTTAATGATCTTCTTGCATGCTGTGGCTTTTTGTGTGGATTTGGTTGTGATGGGGGAGAACCTCTATATGCATGGCGGTACTTAAGCCATCATGGTGTTGTTTCTGAAGAGTGTGACCCATACTTTGATCAAACTGGGTGTGCTCACCCTGGTTGTGAGCCATCATATCCAACTCCCAAGTGTGTTAAAAAATGTGTGAGCGGAAACCTGCTTTGGAAGAAATCAAAGCACTATACTGTGAAGGCATACAAGGTCAAATCTAATCCCTATGATATTATGGCAGAAGTTTTTAAGAATGGGCCCGTTGAAGTTGCATTCACTGTTTACGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACATCACAGGTGATGCACTTGGTGGGCATGCTGTAAAGCTGATTGGGTGGGGAACAAGTGATGATGGGGAGGACTATTGGCTTCTTGCAAACCAATGGAATAGAAGCTGGGGAGATGATGGATACTTCAAGATCAAAAGAGGGACAAACGAATGCGGGATCGAAGGTGATATTACTGCTGGACTCCCTTCATCCAAAAATCTCATAAGAGAGGTGACTGATATGGATGCTAACTCTGATGTTTCATTCTGA 1113 0.4169 MISISCRVEIGEMGFSFVPFAILILAFSSSFLNIAWAETEQQHLPISILNSPILKESIAKQINENPEAGWEAAINPRFSNFTVAQFKRLLGVKKSSRRELTSTPVITHPKSLKLPKNFDARTAWSQCITIGRILDQGHCGSCWAFGAVESLQDRFCIHFDVNVTLSVNDLLACCGFLCGFGCDGGEPLYAWRYLSHHGVVSEECDPYFDQTGCAHPGCEPSYPTPKCVKKCVSGNLLWKKSKHYTVKAYKVKSNPYDIMAEVFKNGPVEVAFTVYEDFAHYKSGVYKHITGDALGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIKRGTNECGIEGDITAGLPSSKNLIREVTDMDANSDVSF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0393 370 Pfam Peptidase family C1 propeptide 55 94 IPR012599 GO:0004197|GO:0050790
Lal18g0393 370 CDD Peptidase_C1A_CathepsinB 115 348 - -
Lal18g0393 370 Pfam Papain family cysteine protease 114 347 IPR000668 GO:0006508|GO:0008234
Lal18g0393 370 PANTHER CATHEPSIN B-LIKE PROTEASE 3 58 356 - -
Lal18g0393 370 SUPERFAMILY Cysteine proteinases 58 350 IPR038765 -
Lal18g0393 370 Gene3D Cysteine proteinases 48 356 - -
Lal18g0393 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 295 305 IPR025660 -
Lal18g0393 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 136 147 IPR000169 -
Lal18g0393 370 SMART pept_c1 114 349 IPR000668 GO:0006508|GO:0008234
Lal18g0393 370 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 58 356 - -
Lal18g0393 370 PRINTS Papain cysteine protease (C1) family signature 136 151 IPR000668 GO:0006508|GO:0008234
Lal18g0393 370 PRINTS Papain cysteine protease (C1) family signature 297 307 IPR000668 GO:0006508|GO:0008234
Lal18g0393 370 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0393 Lal-Chr18 3337349 3342462 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0393 K01363 - gmx:100788988 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0393 18 3337349 3342462 Lal18g0393 18 3337349 3342462 ECH
Lal5g0193 5 1678343 1682819 Lal18g0393 18 3337349 3342462 LSH