Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1440 ATGGCTTGTGTGAAATTTGGTTCCAAGGTTGATGCATTCCAACGTCAAGGGCAAGCATGGTTCTGCACAACCGGGCTTCCGAGTGATGTAGTTGTTGAAGTTGGTGAGATGTCCTTCCATCTTCACAAGTTCCCTTTGCTATCTAGAAGTGGGGTTTTGTTCAGATTGATCACCCAAGCTTCAGAACCAGAGGAAGAGGAAGAATGTGTCGTAGACCTCCACGATATTCCCGGAGGGGCCAAAACCTTTGAACTTGTGGCAAAATTCTGCTACGGCGTGAAACTTGAACTTACAGCATCAAATGTTGTTAATCTCTGGTGCGCCGCTGAGCATCTTGAAATGACTGAGGAGCATGGTGAAGGTAACCTTATTTCACAAGCTGAAACCTTTTTCAATCAAGTGGTCCTCCGAAGTTGGAAAGACTCTGTAAGGGCACTTCAAACCTGTGATGATGTTCTTCCCCATGCTGAAGTACTCCACATTGTGAAAAGGTGCATTGAATCACTTGCAGCAAAGGCATCTACTGACCCAAATTTGTTTGGATGGCCTGTATTGGAGCGCGGCGGGCCTATGCAGAGCCCTGGTGGAAGTGTTTTGTGGAATGGGATAAGTACCGGGGCAAGACCAAAGAATCCAAGTTCAAATTGGTGGTATGAGGATGTAGCAAATTTGAGTTTACCTCTTTATAAGAGGTTGATAGCTGTCATGGATTCTCGGAGCATTAGGCAGGATATTATTGCCGGTTCTCTTGTTTTCTATGCTAAAAGGTATCTACCGGGGTTAAATCGACATCATGCCTCCAGTGATTCCAGTACCCATCTGACACCAGTCACTTCGGGGTCTCCACCGTCTGAAGAAGACCAGAAGATTCTTGTTGAAGAGATTGATCAGTTACTCCCAATGGAAAAGGGCCTGGTCCATACAAAGTTCCTGTTTGGTCTACTTCGAACAGCCATGATTCTTCGAGTGAGCCACTCTTGCATGTCTAATTTGGAGAAACGGATCGGGATGCAGCTTGATCAAGCTACTTTGGAAGATCTCTTGATCCCTACTTTCTCACATTCAATGGAGACACTTTACATTGTCGACTGCGTGCAAAGAATTCTCGATCATTTTCTTGCTATGGATCGGGTTACAGGTGCTGCATCTCCATGTTCAATTGATGACGGCCGGTTGATCGGATCACCTTCGCTGACACCAATCACCATGGTAGCCAAACTGATTGATGGTTATCTGGCAGAGGTTGCCCCGGATGTTAACTTAAAACTTCCCAAGTTCGAAGCCCTTGCTGCTGCTGTTCCAGAGTATGCCAGACCTTTGGATGATGGCCTGTACCGCGCCATAGACATTTATTTGAAGTCTCACCCTTGGTTGGTGGAGTCTGAGAGAGAGCAGCTATGTAGGTTGATGGACTTACAGAAGCTCTCCTTAGAAGCATGCACCCATGCAGCACAGAACGAGCGGCTACCCATAAGAATAATAGTTCAAGTTCTATTTTTCGAGCAGCTCCAGCTCCGGACTTCAATTGCTGGTTGCTTTCTAGTCTCGGATAATCTTGACGGATCGAGGCAATTAAGAAGTGGTTTGATCGGAACCAACGAGGGTGGCTGGACATCCGCCGTGAAGGAGAATCAGGTTTTGAAAGTCGGAATGGATAATATGAGGATGAGGGTATCTGACCTTGAGAAGGAGTGCTCAAACATGAGACACGAGATCGAGAAATTGGGCTGCGTGAAGGGATCAAGCACGTGGGGAGCCGTCTCTAAGAAACTCGGGTTTAGGATCAAGTCTCAGATGTGCAGTGCTGAAGAAGGATCAGTTAGCAACCAGAACAATAATGGAAATATTAAGATTGAGAAGTTGAAGGACAGACATATAGTAAAGCAGAAGAAAAGTTCTTGTATTAGTGACAAAGAATCTGTTTCTTCAATTGTTTCTTCTTAG 1944 0.4563 MACVKFGSKVDAFQRQGQAWFCTTGLPSDVVVEVGEMSFHLHKFPLLSRSGVLFRLITQASEPEEEEECVVDLHDIPGGAKTFELVAKFCYGVKLELTASNVVNLWCAAEHLEMTEEHGEGNLISQAETFFNQVVLRSWKDSVRALQTCDDVLPHAEVLHIVKRCIESLAAKASTDPNLFGWPVLERGGPMQSPGGSVLWNGISTGARPKNPSSNWWYEDVANLSLPLYKRLIAVMDSRSIRQDIIAGSLVFYAKRYLPGLNRHHASSDSSTHLTPVTSGSPPSEEDQKILVEEIDQLLPMEKGLVHTKFLFGLLRTAMILRVSHSCMSNLEKRIGMQLDQATLEDLLIPTFSHSMETLYIVDCVQRILDHFLAMDRVTGAASPCSIDDGRLIGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFEALAAAVPEYARPLDDGLYRAIDIYLKSHPWLVESEREQLCRLMDLQKLSLEACTHAAQNERLPIRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGLIGTNEGGWTSAVKENQVLKVGMDNMRMRVSDLEKECSNMRHEIEKLGCVKGSSTWGAVSKKLGFRIKSQMCSAEEGSVSNQNNNGNIKIEKLKDRHIVKQKKSSCISDKESVSSIVSS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1440 647 Pfam NPH3 family 215 480 IPR027356 -
Lal4g1440 647 ProSiteProfiles BTB domain profile. 28 99 IPR000210 GO:0005515
Lal4g1440 647 Pfam BTB/POZ domain 27 115 IPR000210 GO:0005515
Lal4g1440 647 PANTHER OS12G0117600 PROTEIN 1 619 IPR043454 -
Lal4g1440 647 PANTHER - 1 619 - -
Lal4g1440 647 CDD BTB_POZ_NPY3-like 19 124 - -
Lal4g1440 647 Gene3D Potassium Channel Kv1.1; Chain A 13 133 IPR011333 -
Lal4g1440 647 MobiDBLite consensus disorder prediction 264 285 - -
Lal4g1440 647 ProSiteProfiles NPH3 domain profile. 215 504 IPR027356 -
Lal4g1440 647 Coils Coil 551 571 - -
Lal4g1440 647 MobiDBLite consensus disorder prediction 264 286 - -
Lal4g1440 647 SUPERFAMILY POZ domain 16 116 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1440 Lal-Chr4 18585288 18589770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1440 8 574 EF-hand Containing Proteins AT3G44820 48.376 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1440 - - adu:107479347 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1426 17 15720688 15725566 Lal4g1440 4 18585288 18589770 LSH
Lal21g1153 21 14161594 14167146 Lal4g1440 4 18585288 18589770 LSH