Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1153 ATGGCTTGTGTGAAATTGGGTTCCAAGGCTGATGCATTCCAGCGTCAAGGGCAAGCCTGGTTCTGCACAACCGGGCTTCCCAGTGATTTAGTTGTTGAAGTTGGTGAAATGTCCTTCCATCTTCACAAGTTCCCTTTGCTATCGAGAAGTGGTGTTTTGTCAAGATTGATTACTGAAACTCCAGAATCGGAGGAAGAGGAAGAATGTGTCATACACCTCCTTAATATTCCTGGCGGGGCCAAAACCTTTGAACTTGTGGTAAAATTCTGCTATGGCGTGAAAATTGAACTTACAGCATCAAATGTTGTGTACCTGTGGTGTGCTGCTGAGCATCTTGAAATGACTGAAGAACATGGTGAAGGTAATCTTATTTCACAAGCTGAAACCTTTTTCGGTGAAGTGGTCCTCCGGAGTTGGAAAGACTCTCTAAGGGCACTTCAAACCTGTGATGATGTACTTCCCCATGCTGAAGCGCTCCACATTGTGAGAAGCTGCATTGAATCGCTTGCAGCAAAGGCATCTACCGACACAAATTTGTTAGGATGGCCTGTACTGGAGCGTGGCGGGCCTGTGCAGAGCCCTGATGGAAGTGTTTTGTGGAATGGAATAAGTACTGTGGCAAGACCAAAGAATTCAAGTTCAGATTGGTGGTATGAGGATGTAGCAAATTTGACTTTACCTCATTATAAGAGGTTGGTAGCTGCCATGGAATCTCAGGGCATTAGGCAGGATATTATTGCCGATTCTCTTGCTTTCTATGCTAAAAGGTATCTGCCGGGATTGAATCGACGTCATGTTTCCGGTGAGTCCAGTACCCATCTGACACCAGTCATTTTGGGGTCTCTACCATCTGAAGAAGACCAGAAGATTCTTGTGGAAGAGATTGATCGATTACTCCCAATGGAAAAGGGCTTAGTCCAGACAAAGTTCCTGTTTGGTCTACTTCGAACAGGCATGATTCTTCGAGTGAGCTACTCTTGCACGTCAAATTTAGAGAAACGGATCGGGATGCAGCTTGATCAAGCTGCTTTGGAAGATCTCTTGATGCCTACTTTCTCATATTCAATGGAGACACTTTACAACGTTGACTGTGTGCAAAGAATTCTTGATCATTTCCTTGCTATGGATCAGGATACAGGTGCTGCCTCTCCATGTTCAATTGATGATGGCCAGTTGATTGAATCACCTTCACTTACATCAATCACCATGGTTGCCAAGCTGATTGACGGTTACCTGGCCGAGGTTGCCCCAGATGTTAACTTAAAACTTCCGAAGTTTGAAGCCCTTGCTGCTGCTGTTCCAGAGTATGCAAGGCCTTTAGATGATGGTTTATACCGTGCTATTGACATTTATTTGAAGTCTCACCCTGAGTTGGTTGAATCTGAGAGAGAGCAACTATGTCGGCTGATGGACTGCCAGAAGCTCTCGTTAGAAGCATGCACCCATGCAGCACAGAACGAGCGGCTACCGATCAGAACAATAGTTCAAGTTCTATTTTTCGAGCAACTCCAGCTCCGGACTTCAATTGCAGGTTGCTTTCTAGTTTCAGATAATCTTGATGGGTCGAGACAGTTAAGAAGTGGTTTGATCGGAAATAACGAAGGTGGCTGGCCATCCGCTGTGAAGGAGAATCAGGTTTTGAAAGTGGGAATGGATAACATGAGGATGCGGGTATCTGAGCTTGAGAAGGAATGCTCAAACATGCGGCAGGAGATCGAGAAAGTTGGTCGCGGAAAGGGATCAAGCACTTGGGGATTATTGTGTAAGATGTTTGGTTTTAAGATCAAATCTCAGATTTGCAGTGCTGAAGAAGGATCAGTTAGCAACCAGAATAATGGAAATAGTAAGGTTGAGAAGTTGAAGAACAGATTTGTAGTAAAACACAAGAAAAGTTCTTATATTAGTGCTAAAGAATCTTCAATTGTTCCTCCTTAG 1935 0.4429 MACVKLGSKADAFQRQGQAWFCTTGLPSDLVVEVGEMSFHLHKFPLLSRSGVLSRLITETPESEEEEECVIHLLNIPGGAKTFELVVKFCYGVKIELTASNVVYLWCAAEHLEMTEEHGEGNLISQAETFFGEVVLRSWKDSLRALQTCDDVLPHAEALHIVRSCIESLAAKASTDTNLLGWPVLERGGPVQSPDGSVLWNGISTVARPKNSSSDWWYEDVANLTLPHYKRLVAAMESQGIRQDIIADSLAFYAKRYLPGLNRRHVSGESSTHLTPVILGSLPSEEDQKILVEEIDRLLPMEKGLVQTKFLFGLLRTGMILRVSYSCTSNLEKRIGMQLDQAALEDLLMPTFSYSMETLYNVDCVQRILDHFLAMDQDTGAASPCSIDDGQLIESPSLTSITMVAKLIDGYLAEVAPDVNLKLPKFEALAAAVPEYARPLDDGLYRAIDIYLKSHPELVESEREQLCRLMDCQKLSLEACTHAAQNERLPIRTIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGLIGNNEGGWPSAVKENQVLKVGMDNMRMRVSELEKECSNMRQEIEKVGRGKGSSTWGLLCKMFGFKIKSQICSAEEGSVSNQNNGNSKVEKLKNRFVVKHKKSSYISAKESSIVPP 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1153 644 Pfam NPH3 family 215 480 IPR027356 -
Lal21g1153 644 Coils Coil 544 578 - -
Lal21g1153 644 ProSiteProfiles BTB domain profile. 28 99 IPR000210 GO:0005515
Lal21g1153 644 ProSiteProfiles NPH3 domain profile. 215 504 IPR027356 -
Lal21g1153 644 Gene3D Potassium Channel Kv1.1; Chain A 11 130 IPR011333 -
Lal21g1153 644 PANTHER - 1 619 - -
Lal21g1153 644 Pfam BTB/POZ domain 27 115 IPR000210 GO:0005515
Lal21g1153 644 PANTHER OS12G0117600 PROTEIN 1 619 IPR043454 -
Lal21g1153 644 SMART BTB_4 28 123 IPR000210 GO:0005515
Lal21g1153 644 SUPERFAMILY POZ domain 16 116 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1153 Lal-Chr21 14161594 14167146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1153 8 574 EF-hand Containing Proteins AT3G44820 46.496 1.32e-178 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1153 - - gmx:100779836 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1426 17 15720688 15725566 Lal21g1153 21 14161594 14167146 LSH
Lal21g1153 21 14161594 14167146 Lal4g1440 4 18585288 18589770 LSH