Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0620 ATGGTAGTGAGCCCAATAACAATAGCAGAGTACAGTGGAAGACGAAGAAGAAGAGAAACACATATACAGGTTCTAGCTAGGAACGATGGTATCGCAATTGGTCAAACACGAACTATTGAAACTACTGTTGCCAAGGCGAAGGAGGTTAGAAGACAGGTTGATAGAATGTTAACGCTTGGAAAGGAGGGATCCCTTTGTGCTGCAAAGCGTGCTGCTGCTTTTGTGCGAGGAGATGATGTCATTCACAAGCTGTTCACTGAACTGGCTTATCGGTACAAGGATAGAGCAGGTGGATATACCAGAATGCTTCGGACCCGTATACGTGTGGGTGATGCTGCACCAATGGCCTATATCGAGTTCATCGACCGAGAAAATGAGCTAAGGGAGCCAAAGCCACCAGCACCTCAACCACCACAGAGAGCACCCCTTGATCCGTGGACAAAATCTCGTCTCTGCCAGCGGAAGTCGGTTTGGGCCTTGGTAACTTCGGCCTGTATAGAAGTCGGTTTGGGCCTTGGTAACTTCGGCCTGTATAGAAGTCGGTTTGGGCCTCACCGACTTCTATATAGAAGAAGTGTTTTTTGGAACCGACTTCTATATAGAGGTTTCGGTTTAGACAATGTTATTATTAATACTGTAGCACATCTGAGAAGTGGTCCCTTGAATGTTAATGGGCAATACCAAGCTCTGAAGTGCTGTTTGTTGACAAGTCCTACAGAAAAACCAGCAATGGGAGTTGGTTGTTTCAGTGTATGCACGTCAATGATAAATGAAATTTGGACCATTAAAAAAATGGTGACATTTATTAGCATTTATATTTAG 822 0.4453 MVVSPITIAEYSGRRRRRETHIQVLARNDGIAIGQTRTIETTVAKAKEVRRQVDRMLTLGKEGSLCAAKRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELREPKPPAPQPPQRAPLDPWTKSRLCQRKSVWALVTSACIEVGLGLGNFGLYRSRFGPHRLLYRRSVFWNRLLYRGFGLDNVIINTVAHLRSGPLNVNGQYQALKCCLLTSPTEKPAMGVGCFSVCTSMINEIWTIKKMVTFISIYI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0620 273 SUPERFAMILY Prokaryotic ribosomal protein L17 15 124 IPR036373 GO:0003735|GO:0005840|GO:0006412
Lal4g0620 273 Pfam Ribosomal protein L17 32 121 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lal4g0620 273 Gene3D Ribosomal protein L17 10 121 IPR036373 GO:0003735|GO:0005840|GO:0006412
Lal4g0620 273 PANTHER RIBOSOMAL PROTEIN L17 35 153 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lal4g0620 273 TIGRFAM L17: ribosomal protein bL17 15 122 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lal4g0620 273 ProSitePatterns Ribosomal protein L17 signature. 39 61 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lal4g0620 273 PANTHER BNAA09G06940D PROTEIN 35 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0620 Lal-Chr4 4580159 4584120 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0620 K02879 - vvi:100252405 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0620 4 4580159 4584120 Lal4g0620 4 4580159 4584120 ECH
Lal17g0729 17 5171055 5174225 Lal4g0620 4 4580159 4584120 LSH