Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0586 ATGGCTGCTCGAACCCTATTTACCAAAATAGCCCTACCTTTCTCGATCTTCCGCAACCGCAATGTGACGGCGGCGATAGCAACTCACTCTCGTGGATTACAAACCGTCACGCTACCCGATCTCGATTACGACTATGGTGCATTGGAACCTGCAATTAGTGGAGAAATCATGCAGCTACACCATCAGAAGCATCATCAAGCTTACGTCACCAATTACAATAAATCTATTGAACAGCTTGATCATGCGCTTGTTAAGGGCGATGCCTCTACCGTTGTTAAGGCCCAGAGTGCCATTAAATTTAATGGAGGAGGTCATGTCAACCATTCTATTTTCTGGAAAAATCTGGCTCCTGTTCGTGAAGGAGGCGGTGAACTACCACATGATTCCCTGGGATGGGCCATTGACACTAACTTTGGTTCCTTGGAAGCATTGATACAAAAGATGACTGCAGAAGGCGCAGCCCTTCAGGGGTCTGGATGGGTGTGGCTTGGTCTGGACAAAGAGTTCAAGAGGCTTGTAGTTGAAACCACTGCAAATCAGGACCCACTGGTTACTAAGGGTGCAAATTTGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCATACTACTTACAGTACAAGAATGTGAGGCCAGACTATTTGAAGAACATATGGAAAGTCATTAACTGGAAATATGCCAGTGAATTGTATGAGGAAGAACGCTCTTAG 711 0.4557 MAARTLFTKIALPFSIFRNRNVTAAIATHSRGLQTVTLPDLDYDYGALEPAISGEIMQLHHQKHHQAYVTNYNKSIEQLDHALVKGDASTVVKAQSAIKFNGGGHVNHSIFWKNLAPVREGGGELPHDSLGWAIDTNFGSLEALIQKMTAEGAALQGSGWVWLGLDKEFKRLVVETTANQDPLVTKGANLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASELYEEERS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0586 236 Gene3D Fe,Mn superoxide dismutase (SOD) domain 53 116 IPR036324 -
Lal4g0586 236 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 37 116 IPR019831 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 121 233 IPR036314 -
Lal4g0586 236 PIRSF MnSOD_FeSOD 9 236 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 PRINTS Manganese superoxide dismutase signature 39 50 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 PRINTS Manganese superoxide dismutase signature 60 73 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 PRINTS Manganese superoxide dismutase signature 99 112 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 PRINTS Manganese superoxide dismutase signature 155 163 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 PRINTS Manganese superoxide dismutase signature 195 207 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 PANTHER SUPEROXIDE DISMUTASE 26 234 - -
Lal4g0586 236 ProSitePatterns Manganese and iron superoxide dismutases signature. 197 204 IPR019833 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 Pfam Iron/manganese superoxide dismutases, C-terminal domain 126 228 IPR019832 GO:0004784|GO:0006801|GO:0046872
Lal4g0586 236 Gene3D - 117 236 IPR036314 -
Lal4g0586 236 PANTHER SUPEROXIDE DISMUTASE 2 26 234 - -
Lal4g0586 236 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 35 119 IPR036324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0586 Lal-Chr4 4251358 4254852 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0586 K04564 - gmx:100785490 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0675 17 4771251 4776062 Lal4g0586 4 4251358 4254852 LSH