Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0675 ATGGCTGCGCGAGCTCTATTCAGCAGAAAAACCCTAACTTCCTCCTCCATCATCGCTTCTCATTCCCGTGGACTTCAAACCTTCACGCTTCCCGATCTATCTTACGACTACGGTGCTTTGGAACCCGCAATCAGCGGCGAAATCATGCAACTCCACCATCAGAAACATCATCAGACTTACATCACCAATTATAACAAGGCCATTGAGCAACTCGATCTTGCTCTTTCTAAGGGCGATGCCTCTACCGCTGTTAAGTTACAGAGTGCTATTAAGTTCAATGGCGGAGGTCATATCAACCACTCTATTTTCTGGAAAAATCTTACTCCTGTTCGTGAAGGAGGTGGTGAACCACCCCATGGTTCCCTGGGATGGGCCATTGACACTCATTTTGGTTCCTTTGAAGCATTGATACAAAAGGTTAATGCGGAAGGCGCAGCCCTTCAGGGGTCTGGATGGGTGTGGCTTGGTCTGGACAAAGAGTTGAAGAGACTTGTAGTTGAAACCACTGGAAATCAGGATCCACTGGTTACTAAGGGAGCAAATTTGGTTCCATTGCTTGGTATAGACGTTTGGGAGCATGCATACTACTTACAGTACAAGAATGTGAGACCGGACTATTTGAAGAATATATGGAAAGTTATTAACTGGAAATATGTCAGTGAAGTGTATGAAGCAGAAAGCCCTCAGTCTTAA 693 0.4531 MAARALFSRKTLTSSSIIASHSRGLQTFTLPDLSYDYGALEPAISGEIMQLHHQKHHQTYITNYNKAIEQLDLALSKGDASTAVKLQSAIKFNGGGHINHSIFWKNLTPVREGGGEPPHGSLGWAIDTHFGSFEALIQKVNAEGAALQGSGWVWLGLDKELKRLVVETTGNQDPLVTKGANLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYVSEVYEAESPQS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0675 230 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 113 225 IPR036314 -
Lal17g0675 230 ProSitePatterns Manganese and iron superoxide dismutases signature. 189 196 IPR019833 GO:0004784|GO:0006801|GO:0046872
Lal17g0675 230 PANTHER SUPEROXIDE DISMUTASE 2 1 228 - -
Lal17g0675 230 Gene3D - 109 227 IPR036314 -
Lal17g0675 230 Gene3D Fe,Mn superoxide dismutase (SOD) domain 45 108 IPR036324 -
Lal17g0675 230 PIRSF MnSOD_FeSOD 2 230 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal17g0675 230 PANTHER SUPEROXIDE DISMUTASE 1 228 - -
Lal17g0675 230 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 26 111 IPR036324 -
Lal17g0675 230 Pfam Iron/manganese superoxide dismutases, C-terminal domain 118 221 IPR019832 GO:0004784|GO:0006801|GO:0046872
Lal17g0675 230 PRINTS Manganese superoxide dismutase signature 31 42 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal17g0675 230 PRINTS Manganese superoxide dismutase signature 52 65 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal17g0675 230 PRINTS Manganese superoxide dismutase signature 91 104 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal17g0675 230 PRINTS Manganese superoxide dismutase signature 147 155 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal17g0675 230 PRINTS Manganese superoxide dismutase signature 187 199 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lal17g0675 230 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 27 107 IPR019831 GO:0004784|GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0675 Lal-Chr17 4771251 4776062 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0675 K04564 - pvy:116129687 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0675 17 4771251 4776062 Lal4g0586 4 4251358 4254852 LSH