Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0520 ATGTTCACCTCCACACACTTGAACAACAACAACGACACTCCTTTCCTCTCCGGCGGTGGCGGCCTCCGCGCCACCTTCTCCTCCTTGATGGCTGACGCCGCCATCCGATCCTCTCCGGTGGTCATATTCACCGCAGTCGCTGGACTCGCTCTCGTTGGCGTCATCTTCTTCTACGGTACCAGTAGAATCGTCGATTTGGTTGGAACTACAATGCTCAAAAGAAAAAAGGAAGCAATTTTGCCAATGGTCTATGAAGAGGATATTGGTGAAACCGTTAAAGTCTTTGTCATGTACAAGGAGGTCATGGGTTCGAGTCGTGTTGCACATATCGGGAGTTTTGTTGCTCCAAGTTGCCCTATTTTAGTCATAATCTGTCAGTCTACCTGCTGCACCAAGGATCATAGTTTAGGGGCTTTCAATAATCTGGGTTTTTTCTCTGGATATAGCAACAAGCATGTTGTATTATTGAAGTCACTGCTGAAGCATTCTTCGGACAGGAACCTCATTGATGAATTAAGTAGCAGAGTGATGCTTCTCAAACTGGATGTAGTTGTAATGAGTAATTCTTTTGGGCAAAATTCCAGGGGCCGTCTTAAATCACCATGGTCACGTAGGAAAAGAAAGCGTGTCCTTTCATGTCAACAATGGAAAAGCTTATTTTCAGAAGATGGGAGACTCCATGATGGCGGAATTAAGTTCATGAAAAGAGTTCGCAGTGGAGGTGTTGATCCTAGTATTAGGGCTGAAGTTTGGCCTTTCCTACTTGGAGTCTATGACTTGGACAGTACCAAAGCAGAACGAGATGTTATAAAAACTAAAAACAGAAAGGAATACGAGAAACTCCGTAGACAATGCAGACAACTGCTAAAGCAGAGCAATGGAAGCTTCAACTTAAATGAAAGTGGCGAAATTAGCTACGAAGGAGATGGTCCAAGTCTTATTCAAGATCCAGGATCTCCTAAGTCTGAAGATGCAACAAGTGCCAGGGAATCCCTTTCTAGTGAGGAAAGGAGCCCAGATACTGAATATTCGGACGATCCATCTGGTGCCCTGTTGGAAGGAGATGATGTTCCTAATGTTAGCAATGCTGATACCTCTGCACTGGATACCGGTTCCTCTGATTCAGACTCCTCGGAAGGTCTTGAGGTTATTCAGGCATTTCCTTCTGATGATGTTCGGGAAGAGAGCAATCCCAAGAGGACTTCCAAGGCAAATTCTTCCCCCTCCCTAACGAAGGCCCCATCAAAACTACAAACTAATGAAGATTTTGCCACATGGCAACGAATCATCCGACTTGATTCAGTACGTGCCAATGCAGAATGGATGCCATACTCCCCCTCCCAAGCTATTGTAACTGATAGTAGAGCACATCGTTCTGCGGAGGCTGTTGGCTTGAAGGATTATGGTCACCTAGAGGCCGGAAGAATCTTTCATGCTGCTCGACTAGTTGCTATCCTTGAAGCATATGCATTGTATGACCCTGAAATTGGCTACTGTCAAGGTATGAGTGATCTGCTATCTCCTATAGTTACTGTTATACCAGAAGATCATGAGGCTTTCTGGTGTTTTGTTGGATTCATGAAGAAGGCAAGGCAGAATTTCAGGCTTGATGAGGTGGGTATTAGGAGGCAACTCGATATAGTTGCAAAAATAATCAAGTTTAAGGATGCCCACTTGTTTAGACATTTGGAGAAGCTCCAAGCCGATGATTGCTTTTTCGTGTACAGAATGGTGGTGGTATTGTTTAGAAGGGAGTTGACATTTGAACAGACTCTCTGCCTTTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGGGCAGGTATCGGGAAATCTGCATGGAGCAGAATTAGGCTGCGTGCTCCGCCAACAGATGATTTATTGCTTTATGCCATAGCAGCTTCAGTGTTACAGCGGAGGAAATTAATCATCGAGAAGTATAGCAGCATGGATGAGATCATCAAGGAATGCAATGGCATGGCCGGACATCTTGATGTTTGGAAGTTGCTGGATGATGCACATAACTTGGTGGTCAGCCTCAATGACAAAATAAAATTGAGACAATGA 2067 0.4465 MFTSTHLNNNNDTPFLSGGGGLRATFSSLMADAAIRSSPVVIFTAVAGLALVGVIFFYGTSRIVDLVGTTMLKRKKEAILPMVYEEDIGETVKVFVMYKEVMGSSRVAHIGSFVAPSCPILVIICQSTCCTKDHSLGAFNNLGFFSGYSNKHVVLLKSLLKHSSDRNLIDELSSRVMLLKLDVVVMSNSFGQNSRGRLKSPWSRRKRKRVLSCQQWKSLFSEDGRLHDGGIKFMKRVRSGGVDPSIRAEVWPFLLGVYDLDSTKAERDVIKTKNRKEYEKLRRQCRQLLKQSNGSFNLNESGEISYEGDGPSLIQDPGSPKSEDATSARESLSSEERSPDTEYSDDPSGALLEGDDVPNVSNADTSALDTGSSDSDSSEGLEVIQAFPSDDVREESNPKRTSKANSSPSLTKAPSKLQTNEDFATWQRIIRLDSVRANAEWMPYSPSQAIVTDSRAHRSAEAVGLKDYGHLEAGRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIVTVIPEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDAHLFRHLEKLQADDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRLRAPPTDDLLLYAIAASVLQRRKLIIEKYSSMDEIIKECNGMAGHLDVWKLLDDAHNLVVSLNDKIKLRQ 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0520 688 SMART tbc_4 238 620 IPR000195 -
Lal4g0520 688 ProSiteProfiles TBC/rab GAP domain profile. 241 602 IPR000195 -
Lal4g0520 688 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 229 562 IPR035969 -
Lal4g0520 688 Coils Coil 271 291 - -
Lal4g0520 688 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 172 684 - -
Lal4g0520 688 PANTHER GTPASE ACTIVATOR PROTEIN OF RAB-LIKE SMALL GTPASES-LIKE PROTEIN 172 684 - -
Lal4g0520 688 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 402 534 - -
Lal4g0520 688 MobiDBLite consensus disorder prediction 328 343 - -
Lal4g0520 688 Pfam Rab-GTPase-TBC domain 481 601 IPR000195 -
Lal4g0520 688 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 539 677 IPR035969 -
Lal4g0520 688 MobiDBLite consensus disorder prediction 296 418 - -
Lal4g0520 688 MobiDBLite consensus disorder prediction 401 418 - -
Lal4g0520 688 MobiDBLite consensus disorder prediction 359 382 - -
Lal4g0520 688 Gene3D - 538 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0520 Lal-Chr4 3768113 3773246 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0520 - - gmx:100793557 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0595 17 4253021 4261437 Lal4g0520 4 3768113 3773246 ECH
Lal4g0520 4 3768113 3773246 Lal4g0520 4 3768113 3773246 ECH