Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0595 ATGAATCCTCTTAGCCTTAGGCGAGGTCACAATTCATCTTCAAATTCCTCTCCTTCGTCATCATCTTGGGTCCATTTGCGTTCGGTTCTATTCGTTGTCACTTCTTCCTCACCAGCTTCTTGTTCGTCCTCTTCTTCTGATCGGGGCCGTCTTAAGTCACCATGGTCACGCAGGAGAAGAAAACGCGTTCTTTCATGTCATCAATGGAAAAGCTTATTCACACAAGATGGGAGATTCCATGATGGTGGAATTAAGTTCCTGAAACGCGTTCGCAGTGGAGGTGTTGATCCTAGTATTAGGGCTGAAGTTTGGCCATTCCTACTTGGAGTCTATAACTTGGACAGTACCAATGCAAAACGAGATGTAATAAAAACTCAAAATAGAAAGGAATATGAGAAACTCCGCAGACAGTGCCGACAACTGCTAAAGCAGAGCAATGGAAGCTTCAAGTTAAATGAAAGTGGTGAAATCAGCTATGAAGGAGATGGTGCAAGTGTTGTTCAAGATTCTGGTTCTCCTAATTCTGAAGACGCAACAAGTGCCAGGGAATCCCTTTCTAGCGAGGAAAGGAGTCCAGATACTGAATATTCAGATGATCCATCTATTGCCCTGTTGGAAGGATATGATGTTCTGAATATTAGCAATGCTGATATCTCTGCACTGGATACTGATTCCTCTGATTCAGACTCCTCAGATGGTCTTGAAGTGATTCAGGCATTACCTTCTGATGATGTTCGGGGAGAGAACAATTCCAAGAGAATTTCCAAGGGAAATTCTTCTCTCTCCCCAAGGAAAACCCCATCGAAACTACGAACTAATGAAGATTTTCCTACATGGCAACGAATCATCAGACTTGATGCAGTACGTGCCAATGCAGAATGGTTGCCATACTCCCCCTCCCAAGCTATCGTAACGGACAGTAGGGCACATCGTTCCGCGGAGGCTGTTGGCTTGAAGGATTATGGTCACCTAGAGGCCAGCAGAATCTTTCATGCTGCTCGACTAGTTGCTATTCTTGAAGCATATGCACTGTACGACCCTGAAATTGGCTACTGCCAGGGTATGAGTGATCTGCTATCTCCCATAGTTAGTGTTATACCAGAAGATCATGAGGCCTTCTGGTGTTTTGTTGGATTCATGAAGAAGGCAAGGCAGAATTTCAGGCTTGATGAGGTGGGTATTAGGAGGCAACTTGATATAGTTGCAAAAATAATCAAGTTTAAGGATGCACACTTGTTTAGACATTTGGAGAAGCTTCAGGCCGATGATTGCTTTTTCGTGTATAGAATGGTAGTGGTATTGTTTAGAAGGGAGTTGACATTTGAACAGACTCTCTGCCTCTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGGGCAGGTATTGGGAAATCTGCATGGAGCAGAATTAGGCAACGTGCTCCGCCAACAGATGATTTATTGCTTTATGCCGTAGCAGCTTCAGTGTTACAGCGGAGGAAGTTAATTATTGAAAAATATAGCAGCATGGATGAGATCGTCAAGGAATGCAATGGCATGGCAGGACAGCTTGATGTTTGGAAGTTGCTGGATGATGCACATAACTTGGTGTCCACCCTTAATGACAAAATGAAATTGAGACGTCATACCGATGAATGA 1638 0.4389 MNPLSLRRGHNSSSNSSPSSSSWVHLRSVLFVVTSSSPASCSSSSSDRGRLKSPWSRRRRKRVLSCHQWKSLFTQDGRFHDGGIKFLKRVRSGGVDPSIRAEVWPFLLGVYNLDSTNAKRDVIKTQNRKEYEKLRRQCRQLLKQSNGSFKLNESGEISYEGDGASVVQDSGSPNSEDATSARESLSSEERSPDTEYSDDPSIALLEGYDVLNISNADISALDTDSSDSDSSDGLEVIQALPSDDVRGENNSKRISKGNSSLSPRKTPSKLRTNEDFPTWQRIIRLDAVRANAEWLPYSPSQAIVTDSRAHRSAEAVGLKDYGHLEASRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIVSVIPEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDAHLFRHLEKLQADDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAVAASVLQRRKLIIEKYSSMDEIVKECNGMAGQLDVWKLLDDAHNLVSTLNDKMKLRRHTDE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0595 545 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 74 415 IPR035969 -
Lal17g0595 545 MobiDBLite consensus disorder prediction 252 272 - -
Lal17g0595 545 MobiDBLite consensus disorder prediction 182 196 - -
Lal17g0595 545 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 258 387 - -
Lal17g0595 545 SMART tbc_4 91 481 IPR000195 -
Lal17g0595 545 ProSiteProfiles TBC/rab GAP domain profile. 94 455 IPR000195 -
Lal17g0595 545 MobiDBLite consensus disorder prediction 239 272 - -
Lal17g0595 545 Coils Coil 124 144 - -
Lal17g0595 545 MobiDBLite consensus disorder prediction 1 21 - -
Lal17g0595 545 Gene3D - 391 539 - -
Lal17g0595 545 Pfam Rab-GTPase-TBC domain 334 454 IPR000195 -
Lal17g0595 545 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 392 529 IPR035969 -
Lal17g0595 545 MobiDBLite consensus disorder prediction 160 200 - -
Lal17g0595 545 MobiDBLite consensus disorder prediction 165 181 - -
Lal17g0595 545 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 10 537 - -
Lal17g0595 545 PANTHER GTPASE ACTIVATOR PROTEIN OF RAB-LIKE SMALL GTPASES-LIKE PROTEIN 10 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0595 Lal-Chr17 4253021 4261437 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0595 - - gmx:100793557 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0595 17 4253021 4261437 Lal4g0520 4 3768113 3773246 ECH
Lal17g0595 17 4253021 4261437 Lal17g0595 17 4253021 4261437 ECH