Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0497 ATGATGGAGTCTTTGGAACTTTCTCGTGTTCTTCTTCTAACATCATCATCGTCATTATCACTAACACCATCAACAACAAAGGCAATAAGGCAATTGGGTTTTCGTTGTTTGGTTAAGAAATCAAATAAAAATGCAAACTTGCGTCTCACCAGATCATTTTCTGGCCACACTAGAAGTGGTGCTGTACCTGCTTCTTCACAAGGAGAAGATGAAATGGCTCTTCTATTAGCTAGAGAGATTGATGAATTTGGTTCTATTGTTGGTTTTAATTTGATTCCTGGGTCTGAACAATCATACATCAAATTTTGGAGGATCTTGTGGTTTTTTACTAGGAAAGAGTTAATCCAAGTTTCACGTGTAGGGAATATAGCTGAAGAAGATGCAACTAGCAATAAAGTTGAAGTACCTGAGGCTGGGATTGTAAAAAAAGAGAAAGTTCAGGCTCGAGTATCCTATAGCATTGTTTTCGTTACTGCTGAAGCTGCACCATATTCAAAGACCGGTGGACTTGGAGATGTTTGTGGTTCTTTGCCAATAGCACTAGCAGCTCGTGGACACCGTGTCATGGTTGTTTCTCCCATGTACATACATGGTACTCCTGAGGATAAAAAGTTTTCTGGTGCTGTTAATCTGGATCGCCGCATCAAAGTATATTGCTTTGGTGCTGTTCAAGAAGTTGGCTTTTTCCATGAGTTTAGGGAAGGTGTCGATTGGGTATTTGTGGATCATCCCTCATTCCATAGACCAGGGAATCTATATGGGGACAAATTTGGGAGTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTCCTATGCAGCATGTGAAGCCCCATTGGTGCTTCCATTGGGAGGGTTCACTTATGGAGATAAATGTTTATTCCTTGTTAATGATTGGCATGCCAGCCTAGTTCCAATACTTTTGGCAGCGAAGTATCGTCCACATGGGGTGTATAAGGATGCACGTAGCATATTAGTGATACATAATATTGCACATCAGGGTGTGGAACCTGCAATTACATACAGTAATTTGGGGCTACCTCCAGAATGGTATGGAGCTCTGGAATGGGTGTTCCCTAATTGGGCCAGGATGCATGCTCTTGACACGGGTGAAGCTGTCAATTTTCTAAAAGGTGCCATTGTAACAGTTGACCGGATACTAACAGTAAGCAAGGGTTATTCTTGGGAGATAACAACTAGTGAAGGTGGATATGGTCTACATGAGCTATTAAGCAGTCGGAAAAGCGTTCTCAATGGGATTACAAATGGAATTGATGAAAATGAATGGGATCCATCAACTGATAAACATATTGCTTACAACTATTCTGCTGATGACCTTTCTGGAAAGGTTAAATGCAAGATTTCTCTGCAAAAGGAATTGGGTCTTGCAGTGAGGCCTGAATGTCCTGTGATTGGATTCATTGGAAGATTAGACTACCAGAAAGGTATTGACCTGATTCGCATGGCAATTCCAGAGATCATGGAGAATGATGTTCAGTTTGTAATGCTTGGTTCGGGAAACCCTGAATTTGAGGACTGGATGAGAGCAACAGAGTCGACTTATAGAGATAAATTTCGGGGTTGGGTTGGATTTAATGTTCCGGTATCACATAAGATAACTGCAGGCTGTGATATACTGTTAATGCCATCCACATTTGAGCCCTGTGGACTAAACCAGTTGTATGCAATGAGATATGGAACAGTACCTGTGGTTCATGAAACTGGCGGACTAAGAGATACAGTTCAAAATTTTAATCCATATGCTGAAGGAACCAATGGTGAAGGTGACGGCACAGGGTGGACGTTTTCTCCATTAACGAAAGAGAGCATGTTAGTGGCTCTTGGATATGCCATTAGAACATACAATGAATACAAGTCTTCTTGGAAGGGATTGATGAAAAGAGGAATGGCAAAAGACTACACATGGGTCAATGCTGCAACTCAATATGAGCAAGTTATTGAATGGGCATTCATGGATCCACCCTATTGTTGA 1992 0.4127 MMESLELSRVLLLTSSSSLSLTPSTTKAIRQLGFRCLVKKSNKNANLRLTRSFSGHTRSGAVPASSQGEDEMALLLAREIDEFGSIVGFNLIPGSEQSYIKFWRILWFFTRKELIQVSRVGNIAEEDATSNKVEVPEAGIVKKEKVQARVSYSIVFVTAEAAPYSKTGGLGDVCGSLPIALAARGHRVMVVSPMYIHGTPEDKKFSGAVNLDRRIKVYCFGAVQEVGFFHEFREGVDWVFVDHPSFHRPGNLYGDKFGSFGDNQFRFTLLSYAACEAPLVLPLGGFTYGDKCLFLVNDWHASLVPILLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYSNLGLPPEWYGALEWVFPNWARMHALDTGEAVNFLKGAIVTVDRILTVSKGYSWEITTSEGGYGLHELLSSRKSVLNGITNGIDENEWDPSTDKHIAYNYSADDLSGKVKCKISLQKELGLAVRPECPVIGFIGRLDYQKGIDLIRMAIPEIMENDVQFVMLGSGNPEFEDWMRATESTYRDKFRGWVGFNVPVSHKITAGCDILLMPSTFEPCGLNQLYAMRYGTVPVVHETGGLRDTVQNFNPYAEGTNGEGDGTGWTFSPLTKESMLVALGYAIRTYNEYKSSWKGLMKRGMAKDYTWVNAATQYEQVIEWAFMDPPYC 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0497 663 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 38 663 - -
Lal4g0497 663 Gene3D Glycogen Phosphorylase B; 426 639 - -
Lal4g0497 663 CDD GT5_Glycogen_synthase_DULL1-like 154 655 - -
Lal4g0497 663 Gene3D Glycogen Phosphorylase B; 172 652 - -
Lal4g0497 663 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 38 663 - -
Lal4g0497 663 Hamap Glycogen synthase [glgA]. 152 656 IPR011835 GO:0004373
Lal4g0497 663 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 153 653 IPR011835 GO:0004373
Lal4g0497 663 Pfam Glycosyl transferases group 1 469 603 IPR001296 GO:0016757
Lal4g0497 663 Pfam Starch synthase catalytic domain 154 411 IPR013534 -
Lal4g0497 663 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 149 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0497 Lal-Chr4 3564794 3573223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0497 127 653 Glycosyltransferase AT3G01180 48.876 1.68e-168 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0497 K00703 - gmx:100807354 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0497 4 3564794 3573223 Lal4g0497 4 3564794 3573223 ECH
Lal17g0570 17 4061272 4067410 Lal4g0497 4 3564794 3573223 LSH