Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0570 ATGATGGAGTCTCTAGAACTTTCTCATGTTCTTCTTCTCACTTCTTCTTCTTCATCATCACTATTAACAACAAAGGCTATAAGGCAATTGGGTTTACGTTGTTTGATGAAAAAACCAAATAAAAATGGGAACTTGCGTCTCACCAGATCATTTTCTAGTCACACTGGAGGTGGTGCTGCACCTGCTTCTTCACAAGGAGAAGATGAAGATGCAAGGGATGGGAAAATATCGGAAGAAGATGCAACTAGCAATGGAGTTGAAGTGCCTGAGGCTGGGGATGTAGAAGAAGAGAAAGTTCGGAACAGAGTATCCTATAACATTGTTTTTGTCACTGCAGAAGCTGCACCATATTCAAAGACCGGTGGACTTGGAGATGTTTGTGGTTCATTGCCAATAGCACTAGCAGCCCGCGGACACCGTGTCATGGTTGTCTCTCCCATGTACATAAATAGTACTCCCGGGGATAAAAAGTTTTCTGGTGCTGTTGATCTGAATCGCCGCATCAAACTATATTGCTTTGGTAGTGTTCAAGAAGTTGGCTTTTTCCATGAGTTTAGGGAAGGTGTTGATTGGGTGTTTGTGGATCACCCCTCATTCCATAGGCCAGGGAATCCATATGGGGACAAGTTTGGGACTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTCCTATGCTGCATGTGAAGCCCCATTGGTGCTTCCATTAGGAGGGTTCACTTATGGAAATAAGTGTTTATTCCTTGTTAATGATTGGCATGCCAGCCTAGTTCCAACACTTTTGGCAGCGAAGTATCGTCCACATGGGGTGTATAAGGATGCACGTAGTATATTAGTGATACATAATATTGCACATCAGGGAGTGGAACCTGCAATTACATATGGTAATTTGGGGCTACCTCCAGAATGGTATGGATCTCTGGAATGGGTGTTTCCTAATTGGGCAAGGATGCATGCTCTTGATAAGGGTGAAGCTGTCAATTTTCTAAAAGGCGCCATTGTAACAGCTGACCGAATACTAACAGTAAGCAAGGGTTATTCCTGGGAGATAACAACTAGTGAAGGTGGATATGGTCTACATGAGCTATTAAGCAGTCGACAAAATGTACTCAGTGGGATCACAAATGGAATTGATGAAACTGAATGGGATCCATCAACAGATCAACATATTGCATTCAACTATTCTACCGATGACCTTTCTGGAAAGGTCAAATGCAAGATTTCATTGCAGGAGGAATTGGGTCTTGCAGTGAGGCCTGAATGTCCAGTAATTGGATTCATTGGAAGACTAGACTACCAGAAAGGTATTGACCTGATTCGCATGGCGATTCCAGAGATCATGGAGAATGATGTTCAGTTTGTAATGCTTGGTTCGGGAAACCCTGCGTATGAAGACTGGATGAGAGCAACAGAGTCAGCTTATAGAGATAAATTCCGGGGTTGGGTTGGATTTAATGTTCCAGTATCTCATAAGATTACTGCTGGATGCGATATATTGTTAATGCCATCGGCATTCGAGCCCTGTGGACTAAATCAGTTGTATGCAATGAGATATGGAACAATACCTGTGGTTCATGAAACTGGGGGACTAAGAGATACAGTACAAACTTTTAATCCATATGCTGAAGGAACCAATGATGAAGGTGTAGGAACAGGGTGGACATTTTCTCCACTAACAAAGGAGAGCATGTTAGTGGCTCTTAGACATGCAATAAAAACATACAAAGAATACAAGTGTTCTTGGGAGGGATTGATGAAAAGAGGTATGAGAAGAGATTATACATGGGTAAATGCTGCAAGTCAATATGAACAAGTTATTGAGTGGGCATTCATGGATCCACCCTATTGCTGA 1851 0.4225 MMESLELSHVLLLTSSSSSSLLTTKAIRQLGLRCLMKKPNKNGNLRLTRSFSSHTGGGAAPASSQGEDEDARDGKISEEDATSNGVEVPEAGDVEEEKVRNRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPIALAARGHRVMVVSPMYINSTPGDKKFSGAVDLNRRIKLYCFGSVQEVGFFHEFREGVDWVFVDHPSFHRPGNPYGDKFGTFGDNQFRFTLLSYAACEAPLVLPLGGFTYGNKCLFLVNDWHASLVPTLLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYGNLGLPPEWYGSLEWVFPNWARMHALDKGEAVNFLKGAIVTADRILTVSKGYSWEITTSEGGYGLHELLSSRQNVLSGITNGIDETEWDPSTDQHIAFNYSTDDLSGKVKCKISLQEELGLAVRPECPVIGFIGRLDYQKGIDLIRMAIPEIMENDVQFVMLGSGNPAYEDWMRATESAYRDKFRGWVGFNVPVSHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQTFNPYAEGTNDEGVGTGWTFSPLTKESMLVALRHAIKTYKEYKCSWEGLMKRGMRRDYTWVNAASQYEQVIEWAFMDPPYC 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0570 616 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 610 - -
Lal17g0570 616 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 72 616 - -
Lal17g0570 616 MobiDBLite consensus disorder prediction 43 95 - -
Lal17g0570 616 CDD GT5_Glycogen_synthase_DULL1-like 106 608 - -
Lal17g0570 616 Pfam Starch synthase catalytic domain 106 364 IPR013534 -
Lal17g0570 616 Gene3D Glycogen Phosphorylase B; 379 592 - -
Lal17g0570 616 Pfam Glycosyl transferases group 1 422 572 IPR001296 GO:0016757
Lal17g0570 616 Hamap Glycogen synthase [glgA]. 105 609 IPR011835 GO:0004373
Lal17g0570 616 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 106 606 IPR011835 GO:0004373
Lal17g0570 616 Gene3D Glycogen Phosphorylase B; 125 605 - -
Lal17g0570 616 MobiDBLite consensus disorder prediction 43 60 - -
Lal17g0570 616 MobiDBLite consensus disorder prediction 66 80 - -
Lal17g0570 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 72 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0570 Lal-Chr17 4061272 4067410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0570 106 606 Glycosyltransferase AT3G01180 50.984 1.13e-167 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0570 K00703 - gmx:100807354 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0570 17 4061272 4067410 Lal17g0570 17 4061272 4067410 ECH
Lal17g0570 17 4061272 4067410 Lal4g0497 4 3564794 3573223 LSH