Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0493 ATGTCTCTCTCCAAAGCCACTTTCCTCAACCACCTCCGAACCGCCACCACCTTCCACCGCCAACCACCCTCCACCGTCTCCCTCCGCTTCCTCTCCTTCTCCTCCCCAGAAGAAGCCGCCGCTGAACGCCGCCGCCGCAAACGCCAACTCCGCATCGAACCCCCTCTCTCCGCCCTCAACCGCACCCAAACCCAAAACCAACCCAACCAGAAATCACAATCGACCTATTACCTCAACCCCAACAACCCTAAACTCCCCGAACATGTTACCGCTCTAACCGGTAACCGTCTCAACCTCCACAACCGAATCCTCACCCTAATCCGCGAAAACGACCTTGATGAGGCTGCGTTGTACACGCGCCATTCAATTTACTCTAACTGCCGTCCCACTATTTTCACCATTAATGCCGTCCTCTACGCGCTCCTTCGTCAATCCAAATATTCCGATCTGCTTTCGCTGCATCGGTTTATAACGCAGGCCGGGGTAGTGCCGAATACCGTCACTTATAATTTGATTTTCCAGACTTATCTTGATTGCCGCAAGGCAGATACTGCGTTGGAACATTACAAGCAGTTTGTAAATGATGCTCCAATGAACCCTAATCCAACGACTTATCGAATTTTGATTAAGGGTTTGGTTGATAATGGTAAATTGGAACGTGCCTTGGAGATCAAGCAAGAAATGGATTCTAGGGGTTTTGCACCTGATCCTCTTATTTATCATTATTTGATGCTTGGTTGTGCTAGGGGTTCGGATTCGGATCGTGTTTTTGAGCTTTATAAGGATCTGAAGGGGAAATTAGGAGGGGTATCGGAAGACGGGGTTGTGTATGGGAGTTTGATGAGAGGGTATTTTTTGAGGGGGATGGAGAAGGAGGCTATGGAGTGTTATGAGGAAGCTGTTGGGATGGATTCAAAAGTGAAGATGAGTGTCGTGGGTTATAACTCAGTGCTTGATGCATTGAGCAAGAATGGGAGGTTTGATGAAGCTTTGAAGTTGTTCGATAGGATGATGAGGGAACATGTGCCGCCGAGGAAGTTGGTGGTGAATTTGGGGAGTTTTAATGTGATGGTGGATGGGTATTGTGGTCAAGGGAAGTTTAAGGAGGCGGTTGAAGTTTTTAGGAAGATGGGGGAGTTTAGGTGCAGGCCCGATACATTGTCGTTTAACAATTTGATTGAGCAGTTGTGTAACAATGGTCTGATTTTGGAAGCTGAGGAGGTTTATGGAGAAATGGAGGGGAAGGGGGTGAACCCTGACGAGGTTACTTATGGATTGTTGATGGATACTTGCTTCAAAGAGAATAGGCCTGATGACGCAGCTGGGTATTTTAAGAAGATGGTTGATTCGGGACTGAGACCGAACTTGGCTGTTTACAATAGGTTGGTTGATGGCTTGGTTAAGGTTGGGAAGATCGATGAAGCGAAGTTGTTCTTTGAGCTAATGGTGAAGAAGCTCAAGATGGATGTTGCTAGCTATCAGTTCATGATGAAGGTGTTAAGTGAAGCCGGAAGGTTGGACGAGGTGCTTCAGATCGTTGATACGTTGTTGGATGACAATGGAGTTGATTTTGATGAGGAGTTCCAAGAGTTTGTTAAGGTGGAGTTGAGGAAAGAAGGGAGGGAAGATGAGTTGGCGAAATTGATGGAGGAGAAGGAAAGGCTGAAAGCCGAAGCTAAAGCTAAGGAGGCTGAGGCAGCCGAAGCTGATAAAAGAAGTGCAAGAGCAGCAGTTGCTTCTTTGCTTCCATCCAAGTTGTTTGGGAATAAGGAAACGGATTCAGAGTCTAAACCAGAGGGTGAGTTTCAAGCTCTTAAAGAAGAGAGTGCCGAGTCAGAATATGCAGAGAAGATAACTGAAGATGTGGGCTCAAATGATGGAGAGACTAAAAGTGATAGTTCTAGTGAAACTGCAGCTTCGTGA 1923 0.4685 MSLSKATFLNHLRTATTFHRQPPSTVSLRFLSFSSPEEAAAERRRRKRQLRIEPPLSALNRTQTQNQPNQKSQSTYYLNPNNPKLPEHVTALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLYALLRQSKYSDLLSLHRFITQAGVVPNTVTYNLIFQTYLDCRKADTALEHYKQFVNDAPMNPNPTTYRILIKGLVDNGKLERALEIKQEMDSRGFAPDPLIYHYLMLGCARGSDSDRVFELYKDLKGKLGGVSEDGVVYGSLMRGYFLRGMEKEAMECYEEAVGMDSKVKMSVVGYNSVLDALSKNGRFDEALKLFDRMMREHVPPRKLVVNLGSFNVMVDGYCGQGKFKEAVEVFRKMGEFRCRPDTLSFNNLIEQLCNNGLILEAEEVYGEMEGKGVNPDEVTYGLLMDTCFKENRPDDAAGYFKKMVDSGLRPNLAVYNRLVDGLVKVGKIDEAKLFFELMVKKLKMDVASYQFMMKVLSEAGRLDEVLQIVDTLLDDNGVDFDEEFQEFVKVELRKEGREDELAKLMEEKERLKAEAKAKEAEAAEADKRSARAAVASLLPSKLFGNKETDSESKPEGEFQALKEESAESEYAEKITEDVGSNDGETKSDSSSETAAS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0493 640 MobiDBLite consensus disorder prediction 587 640 - -
Lal4g0493 640 MobiDBLite consensus disorder prediction 39 84 - -
Lal4g0493 640 Gene3D Tetratricopeptide repeat domain 435 609 IPR011990 GO:0005515
Lal4g0493 640 Gene3D Tetratricopeptide repeat domain 96 269 IPR011990 GO:0005515
Lal4g0493 640 SUPERFAMILY TPR-like 169 513 IPR011990 GO:0005515
Lal4g0493 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 485 IPR002885 -
Lal4g0493 640 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 603 - -
Lal4g0493 640 MobiDBLite consensus disorder prediction 590 627 - -
Lal4g0493 640 Pfam PPR repeat 275 299 IPR002885 -
Lal4g0493 640 Pfam PPR repeat 458 485 IPR002885 -
Lal4g0493 640 Pfam PPR repeat 353 382 IPR002885 -
Lal4g0493 640 Pfam PPR repeat 314 340 IPR002885 -
Lal4g0493 640 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 603 - -
Lal4g0493 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Lal4g0493 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Lal4g0493 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Lal4g0493 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Lal4g0493 640 Coils Coil 538 577 - -
Lal4g0493 640 MobiDBLite consensus disorder prediction 56 81 - -
Lal4g0493 640 Pfam PPR repeat family 164 213 IPR002885 -
Lal4g0493 640 Pfam PPR repeat family 384 432 IPR002885 -
Lal4g0493 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Lal4g0493 640 TIGRFAM PPR: pentatricopeptide repeat domain 353 386 IPR002885 -
Lal4g0493 640 TIGRFAM PPR: pentatricopeptide repeat domain 458 485 IPR002885 -
Lal4g0493 640 TIGRFAM PPR: pentatricopeptide repeat domain 204 236 IPR002885 -
Lal4g0493 640 TIGRFAM PPR: pentatricopeptide repeat domain 314 344 IPR002885 -
Lal4g0493 640 TIGRFAM PPR: pentatricopeptide repeat domain 422 455 IPR002885 -
Lal4g0493 640 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Lal4g0493 640 Gene3D Tetratricopeptide repeat domain 270 348 IPR011990 GO:0005515
Lal4g0493 640 Gene3D Tetratricopeptide repeat domain 349 434 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0493 Lal-Chr4 3536349 3538271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0493 129 551 Glycosyltransferase AT1G05670 22.907 6.23e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0493 - - gmx:100778705 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0493 4 3536349 3538271 Lal4g0493 4 3536349 3538271 ECH
Lal17g0566 17 4027497 4029395 Lal4g0493 4 3536349 3538271 LSH