Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0566 ATGGCTATTTCCAAAGCCACCTTCCTCCTCCACCTCCGAACCGCCGCCAACCCCCGCCGTCAACCACCCACCACTATCTCCCTCCGCTTCCTCTCCTTCTCCTCCCCAGAAGAAGCCGCCGCTGAACGCCGCCGTCGCAAGCGCCAGCTCCGCATCGAACCCCCTCTCTCCGCCCTGAACCGCACCCAAACCCAAAACCAACCCAACCCCAACAACAAATCCCAAACCCCATATTACCTGAACCCCAACAACCCTAAACTCCCCGAACACGTTACCGCTCTAACCGGTAACCGTCTCAACCTCCACAACCGAATCTTAACCCTAATTCGCGAAAACGACCTCGACGAAGCTGCGTTGTACACGCGTCATTCGATTTACTCCAATTGCCGTCCCACTATATTCACCATCAATGCTGTTCTCTACGCGCTGCTTCGTCAATCGAAGTATTCTGATTTGCTATCGCTGCATCGATTTATAACGCAGGCCGGGGTAGTGCCGAATATTATTACTCATAATTTGATTTTCCAGACTTATCTTGATTGTCGCAAGCCGGATACGGCTTTGGAGCATTACAAGCAGTTTGTAAATGATGCCCCAATGAACCCTAATCCTACGACTTATCGAATTTTGATCAAGGGTTTGGTTGATAATGGTAAATTGGAACGTGCCTTGGAGATCAAGCAAGAGATGGATTCTAGAGGTTTTGCACCTGATCCTCTTGTTTATCATTATTTGATGCTTGGTTGTGCTAGGGGTTCGGATTCGGATCGTGTTTTTGAACTTTATGAGGATTTGAAGGGGAAATTGGGTGGTGATTTGGAAGATGGGGTTGTGTATGGGAGCTTGATGAAAGGGTATTTTCTGAGGGGGATGGAGAAGGAGGCTATGGAGTGTTATGAGGAAGCTCTTGGGGTGGATTCGAAAGTGAAGATGAGTGCTGTAGGTTATAATTCAGTGCTTGATGCGTTGAGCAAGAATGGGAAGTTTGATGAGGCATTGGTGTTGTTTGATAGGATGATGAGGGAGCATGCGCCGCCGAGAAGCTTGGTGGTGAACTTGGGGAGTTTTAACGTGATGGCGGATGGGTATTGCGCTCAAGGGAGGTTTAAGGAGGCAATTGAAGTGTTTAGGAAAATGTCGGATTTTAGGTGTAGGCCAGATACCTTGTCGTTTAATAATTTGATTGAGCAGTTGTGTAACAATGGGATGATTGTGGAAGCTGAAGAGGTTTATGGAGAAATGGAGGGCAAGGGAGTGAACCCGGATGAGGTTACTTATGGATTGTTGATGGATACTTGCTTCAAGGAGGATAGGCCTGATGATGCAGCTGGATATTTTAGGAAGATGGTTGATTCGGGGCTGAGGCCGAACTTGGCTGTTTACAATAGGTTGGTTGATGGCTTGGTTAAGGTTGAGAAGATCGATGAGGCGAAGTCGTTCTTTGAGCTAATGGTGAAGAAGCTCAAGATGGATGTTGCTAGCTATCAGTTCATGATGAAGGTGCTGAGTGAGGCAGGAAGGTTGGATGAGGTGCTTCAGATCGTTGATACATTGTTGGATGACAATGGCGTTGATTTTGATGAGGAGTTCCAAGAGTTTGTTAAGGTGGAGTTGAGGAAAGAGGGGAGGGAGGATGAGTTGGCGAAATTGATGGAGGATAAGGAAAGGCTGAAAGCTGAAGCAAAGGCTAAAGAGGCTGAGGCAGCTGAAGCTGCTAAAAGAAGTGCAAGAGCTGCAGTAGCTTCTTTGCTTCCGTCCAAGTTGTTTGGGAATAAGGAAACAGATTCAGAGTCTAAACCGGAGGAGTCAGAGTCTACAGAGAAAATAACAGAAGCTGAGGGTTCAGGTGATGGTGAGGCTAAAAGTGATGGTGCAAGTGAACAAGTAACAACAGCTTGA 1899 0.4729 MAISKATFLLHLRTAANPRRQPPTTISLRFLSFSSPEEAAAERRRRKRQLRIEPPLSALNRTQTQNQPNPNNKSQTPYYLNPNNPKLPEHVTALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLYALLRQSKYSDLLSLHRFITQAGVVPNIITHNLIFQTYLDCRKPDTALEHYKQFVNDAPMNPNPTTYRILIKGLVDNGKLERALEIKQEMDSRGFAPDPLVYHYLMLGCARGSDSDRVFELYEDLKGKLGGDLEDGVVYGSLMKGYFLRGMEKEAMECYEEALGVDSKVKMSAVGYNSVLDALSKNGKFDEALVLFDRMMREHAPPRSLVVNLGSFNVMADGYCAQGRFKEAIEVFRKMSDFRCRPDTLSFNNLIEQLCNNGMIVEAEEVYGEMEGKGVNPDEVTYGLLMDTCFKEDRPDDAAGYFRKMVDSGLRPNLAVYNRLVDGLVKVEKIDEAKSFFELMVKKLKMDVASYQFMMKVLSEAGRLDEVLQIVDTLLDDNGVDFDEEFQEFVKVELRKEGREDELAKLMEDKERLKAEAKAKEAEAAEAAKRSARAAVASLLPSKLFGNKETDSESKPEESESTEKITEAEGSGDGEAKSDGASEQVTTA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0566 632 MobiDBLite consensus disorder prediction 56 82 - -
Lal17g0566 632 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Lal17g0566 632 TIGRFAM PPR: pentatricopeptide repeat domain 460 487 IPR002885 -
Lal17g0566 632 TIGRFAM PPR: pentatricopeptide repeat domain 316 342 IPR002885 -
Lal17g0566 632 TIGRFAM PPR: pentatricopeptide repeat domain 206 238 IPR002885 -
Lal17g0566 632 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Lal17g0566 632 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Lal17g0566 632 Gene3D Tetratricopeptide repeat domain 438 614 IPR011990 GO:0005515
Lal17g0566 632 Gene3D Tetratricopeptide repeat domain 98 271 IPR011990 GO:0005515
Lal17g0566 632 Pfam PPR repeat family 386 434 IPR002885 -
Lal17g0566 632 Pfam PPR repeat family 202 251 IPR002885 -
Lal17g0566 632 Gene3D Tetratricopeptide repeat domain 272 349 IPR011990 GO:0005515
Lal17g0566 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Lal17g0566 632 Gene3D Tetratricopeptide repeat domain 350 437 IPR011990 GO:0005515
Lal17g0566 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Lal17g0566 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 603 - -
Lal17g0566 632 SUPERFAMILY TPR-like 101 513 IPR011990 GO:0005515
Lal17g0566 632 Coils Coil 540 579 - -
Lal17g0566 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 603 - -
Lal17g0566 632 MobiDBLite consensus disorder prediction 592 620 - -
Lal17g0566 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Lal17g0566 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lal17g0566 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Lal17g0566 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 487 IPR002885 -
Lal17g0566 632 MobiDBLite consensus disorder prediction 39 83 - -
Lal17g0566 632 MobiDBLite consensus disorder prediction 588 632 - -
Lal17g0566 632 Pfam PPR repeat 277 301 IPR002885 -
Lal17g0566 632 Pfam PPR repeat 316 342 IPR002885 -
Lal17g0566 632 Pfam PPR repeat 355 384 IPR002885 -
Lal17g0566 632 Pfam PPR repeat 460 487 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0566 Lal-Chr17 4027497 4029395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0566 290 535 Glycosyltransferase AT1G05670 25.397 1.69e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0566 - - gmx:100778705 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0566 17 4027497 4029395 Lal17g0566 17 4027497 4029395 ECH
Lal17g0566 17 4027497 4029395 Lal4g0493 4 3536349 3538271 LSH