Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0492 ATGGGATGCTATCTTTCAACTTCAAATAAAGTCCAAAAACCAGGTTATGAGGAACCCAATGTTCTTGCTTCTGAGACACCTTTTACTGTGAGTGAAGTAGAAGCCTTATATGAACTCTATAAGAAGTTGAGTAACTCAATTATTGAAGATGGTCTTATTCACAGGGAAGAATTCCAGCTTGCGCTATTCAGGAATAAAAACAAGAGAAATCTATTTGCAGACAGGATTTTTGATTTATTTGATCTCAAGCGCAATGGGGTCATTGAGTTTGGTGAATTTGTTCGATCACTAGGTATTTTTCACCCAAATGCAGCTTTAGAAGACAAGACTGCATTCGCTTTTAGATTGTATGATCTGAGGCAGACAGGGTATATCGAACGAGAAGAGCTGAAGGAGATGGTATTGGCACTTCTGCACGAGTCGGATCTTATGCTTTCAGATGACATGATTGAAGCCATTGTTGATAAGACTTTTGGTGATGCTGATACAAAAGGTGATGGAAGGATTGATCAAGATGAGTGGAAGGCATTTGTGTCTAAGCACCCATCCTTGATAAAGAACATGACCCTACCATATCTGAAGGATATAACCTTAGCATTTCCAAGTTTTATTGTAAGAACAGAAGTTGAAGACTCAGAGGTATGA 645 0.386 MGCYLSTSNKVQKPGYEEPNVLASETPFTVSEVEALYELYKKLSNSIIEDGLIHREEFQLALFRNKNKRNLFADRIFDLFDLKRNGVIEFGEFVRSLGIFHPNAALEDKTAFAFRLYDLRQTGYIEREELKEMVLALLHESDLMLSDDMIEAIVDKTFGDADTKGDGRIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFIVRTEVEDSEV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0492 214 CDD EFh 112 179 IPR002048 GO:0005509
Lal4g0492 214 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Lal4g0492 214 Pfam EF-hand domain pair 49 95 IPR002048 GO:0005509
Lal4g0492 214 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Lal4g0492 214 PRINTS Recoverin family signature 76 97 - -
Lal4g0492 214 PRINTS Recoverin family signature 123 141 - -
Lal4g0492 214 PRINTS Recoverin family signature 169 189 - -
Lal4g0492 214 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Lal4g0492 214 SMART efh_1 109 137 IPR002048 GO:0005509
Lal4g0492 214 SMART efh_1 153 181 IPR002048 GO:0005509
Lal4g0492 214 SMART efh_1 72 100 IPR002048 GO:0005509
Lal4g0492 214 Pfam EF-hand domain pair 108 177 IPR002048 GO:0005509
Lal4g0492 214 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 214 - -
Lal4g0492 214 Gene3D - 18 212 - -
Lal4g0492 214 PANTHER CALCINEURIN B 1 214 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lal4g0492 214 SUPERFAMILY EF-hand 19 202 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0492 Lal-Chr4 3526366 3533259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0492 26 214 EF-hand Containing Proteins AT5G24270 74.603 1.75e-102 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0492 K06268 - gmx:100811649 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0492 4 3526366 3533259 Lal4g0492 4 3526366 3533259 ECH
Lal21g0568 21 4209203 4214667 Lal4g0492 4 3526366 3533259 LSH