Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0568 ATGGGTTGCTATTTTTCAACTTCAAAGAAAGCCAAAACACCAGGTTATGAGGAACCAAGTGTTCTTGCTTCTGAGACACCTTGTGAGTATCCATCATCAAGTGTTACTGTGAGTGAAGTAGAAGCCTTATATGAACTCTATAAGAAGTTGAGCAATTCAGTTATTCAAGATGGTCTTATTCACAAGGAAGAATTTCAGCTAGCACTCTTCAGGAATAAAAACAAGAGAAATCTATTTGCTGACAGGATTTTTGATTTGTTTGATGTCAAGCGCAACGGGGTCATTGAGTTCGGGGAATTTGTTCGATCACTTGGTACTTTTCACCCAAAAGCAGATTTAGATGACAAGATTGCATTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTATATTGAACGAGAAGAGCTGAAGGAGATGGTATTGGCACTTCTAAACGAGTCCGATCTTGTGCTTTCGGATGAAATGATTGAAGCCATTGTAGATAAGACTTTTAGTGATGCTGATACAAAAGGTCATGGAAGGATTGATCAAGATCAGTGGAAGGCATTTGTGTCTAAACATCCATCATTGATAAAGAACATGACCCTACCATATCTAAAGGATATAACATTAGCATTTCCAAGTTTTGTTTTAAGAACAGAAGTTGAAGACTCATAA 660 0.3773 MGCYFSTSKKAKTPGYEEPSVLASETPCEYPSSSVTVSEVEALYELYKKLSNSVIQDGLIHKEEFQLALFRNKNKRNLFADRIFDLFDVKRNGVIEFGEFVRSLGTFHPKADLDDKIAFAFRLYDLRQTGYIEREELKEMVLALLNESDLVLSDEMIEAIVDKTFSDADTKGHGRIDQDQWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVLRTEVEDS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0568 219 PANTHER CALCINEURIN B 1 219 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lal21g0568 219 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
Lal21g0568 219 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 219 - -
Lal21g0568 219 Gene3D - 31 219 - -
Lal21g0568 219 Pfam EF-hand domain pair 115 179 IPR002048 GO:0005509
Lal21g0568 219 SUPERFAMILY EF-hand 34 209 IPR011992 -
Lal21g0568 219 SMART efh_1 79 107 IPR002048 GO:0005509
Lal21g0568 219 SMART efh_1 160 188 IPR002048 GO:0005509
Lal21g0568 219 SMART efh_1 116 144 IPR002048 GO:0005509
Lal21g0568 219 CDD EFh 116 186 IPR002048 GO:0005509
Lal21g0568 219 PRINTS Recoverin family signature 83 104 - -
Lal21g0568 219 PRINTS Recoverin family signature 130 148 - -
Lal21g0568 219 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Lal21g0568 219 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0568 Lal-Chr21 4209203 4214667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0568 35 218 EF-hand Containing Proteins AT5G24270 75.543 4.59e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0568 K06268 - gmx:100811649 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0568 21 4209203 4214667 Lal21g0568 21 4209203 4214667 ECH
Lal21g0568 21 4209203 4214667 Lal4g0492 4 3526366 3533259 LSH