Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0457 ATGGTGCTTACATCGTCTGTTCGTGATTACGTCAACCGTATGTTGCAGGATATCTCCGGCATGAAAGTTCTTATCCTCGATTCCCAAACGGTTAGCATTGTGAGTGTTGTGTATTCACAGTCAGACCTTCTCCAGAAAGAAGTGTTTTTGGTAGAGTTGATAGATTCTATTTCCAAGTCAAAAGAATTGATGTCACATCTCAAAGCGGTTTACTTTCTTCGACCTACATCAGAGAACATCCAGCTATTGCGCCGCCAGCTGGCCAGTCCTAGATTTGGAGAGTATCACCTATTTTTCTCCAACATATTGAAGGACACTCAGATTCATATACTTGCTGATTCAGATGAACAGGAAGCTGTCCAGCAAGTTCAGGAATTCTATGCAGACTTTGTTGCAATTGATCCTTATCACTTCACTTTGCATGTGCCTTCAAATTACATTTATATGCTCCCAGCGGTGGTAGATCCTTCAACAGTGCAGCGTTTCTGTGATCGGGTTGTTGATGGTCTTGCAGCTTTGTTTTTGGCATTAAAACGAAGACCAGTAATTAGATATCAAAGAACATCTGACGTTGCAAAAAGGATAGCACAGGAAGCATCTAAACTGATGTACCAACAGGAAAGTGGTCTTTTTGACTTTAGGCGAACAGAAGTTGCTCCATTGTTGTTAGTGATTGACAGGAGGGATGATCCTGTAACACCATTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTGGTAGGAATCGAAGACAACAAAGTGGACTTGAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGCTGTCATCGGACCAGGATTCCTTTTTCAAAACTAACATGTATGAGAATTTTGGAGATATAGGTATGAATATTAAACGGCTGGTTGATGAATTTCAGCAAGTGGCAAAGAGTAACCAGAACATTCAAACAGTAGAGGACATGGCCAAATTTGTTGACAATTACCCTGAGTACAGAAAAATGCATGGAAATGTGTCAAAACATGTGACTTTGGTAACAGAAATGAGCAAGATAGTTGAACAGCGAAAACTTATGATAGTTTCCCAAACAGAACAAGAATTGGCTTGCAATGGAGGGCAAGGAGCTGCTTTTGAGGCACTGACAAATCTACTTAACAATGAAAGCATATTAGATGTGGACCGACTACGTTTGGTCATGCTGTATGCTTTGCGATATGAGAAGGATAGCCCGGTTCAGTTAATGCAGCTTTTCAACAAACTGGCTTCCCGATCTGCCAAGTATAAACCTGGGCTTGTCCAGTTTCTTTTGAAGCAAGCAGGTGTTGACAAGAGAACTGGTGATCTTTTTGGAAATCGGGATCTCATGAATATTGCCCGTAACATGGCTCGTGGGTTGAAGGGTATTGAAAATGTTTACACCCAGCACCAGCCACTTCTGTTCCAAACAATGGAAAACATTGTCAAAGGGCGGTTGAGAGATGTCGACTACCCATTTGTTGGAAATCACTTTCAACAAGGAAGGCCACAAGAAGTGATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCACGATCGGTTGCTCTACAAAATGCTAGCAATACCGGAATTCGGTTTATACTTGGTGGCTCTTCTGTTCTTAATTCTAAAAGGTTTTTTAAGGACTTGGAAGAAGCTCAAAGGGTAGCTCGTATTAGCACCTCTGTTGTTTAA 1707 0.4136 MVLTSSVRDYVNRMLQDISGMKVLILDSQTVSIVSVVYSQSDLLQKEVFLVELIDSISKSKELMSHLKAVYFLRPTSENIQLLRRQLASPRFGEYHLFFSNILKDTQIHILADSDEQEAVQQVQEFYADFVAIDPYHFTLHVPSNYIYMLPAVVDPSTVQRFCDRVVDGLAALFLALKRRPVIRYQRTSDVAKRIAQEASKLMYQQESGLFDFRRTEVAPLLLVIDRRDDPVTPLLNQWTYQAMVHELVGIEDNKVDLKSIGKFPKDQEEVVLSSDQDSFFKTNMYENFGDIGMNIKRLVDEFQQVAKSNQNIQTVEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVEQRKLMIVSQTEQELACNGGQGAAFEALTNLLNNESILDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLFGNRDLMNIARNMARGLKGIENVYTQHQPLLFQTMENIVKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTTYEESRSVALQNASNTGIRFILGGSSVLNSKRFFKDLEEAQRVARISTSVV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0457 568 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Lal4g0457 568 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Lal4g0457 568 Gene3D - 2 128 IPR043154 -
Lal4g0457 568 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Lal4g0457 568 Gene3D - 138 555 IPR027482 -
Lal4g0457 568 Gene3D - 353 474 - -
Lal4g0457 568 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Lal4g0457 568 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Lal4g0457 568 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0457 Lal-Chr4 3219977 3225749 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0457 K12479 - gmx:100782786 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0457 4 3219977 3225749 Lal4g0457 4 3219977 3225749 ECH
Lal21g0546 21 3984306 3991594 Lal4g0457 4 3219977 3225749 LSH