Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0546 ATGGTTCTCACTTCCTCCGTTCGTGATTACATCAACCGTATGTTGCAGGATATCTCCGGCATGAAGGTTCTCATCCTCGATTCCCAAACGGTTAGCATTGTGAGTGTTGTGTATTCACAGTCAGATCTTCTTCAGAAAGAAGTGTTTTTGGTAGAGTTGATAGATTCTATTTCAAAGTCAAATGAATTGATGTCGCATCTCAAGGCCGTTTACTTTCTTCGACCTACATCAGAGAACATCCAGCTTTTGCGCCGCCAGCTGGGTAGTCCCAGATTTGGAGAGTGTCATCTATTTTTCTCCAACATATTGAAGGACACTCAGATTCACATACTTGCTGATTCAGATGAACAGGAAGTTGTGCAGCAAGTTCAGGAATTCTATGCAGACTTTGTTGCAATCGATCCTTTTCATTTCACTTTGCATGTGCCTTCAAATTACATTTATATGCTGCCAGCTGTGGTAGATTCTTCAACATTGCAGCGCTTCTGTGATCGGGTTGTTGATGGTCTTGCAGCATTGTTTTTGGCACTAAAACGGAGGCCAATAATTAGATATCAAAGGACATCTGATGTTGCAAAAAGAATAGCACAGGAAGCAGCGAAACTGATGTACCAACAGGAAAGTGGTCTTTTTGATTTTAGGCGAACAGAAGTTTCTCCATTGTTGTTAGTGATTGACAGGAGGGATGATCCTGTAACGCCATTGCTCAATCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAAGTGGACTTGAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGCTGTCATCAGAACAAGATTCCTTTTTCAAAACTAACATGTATGAGAACTTTGGAGATATAGGTATGAATATCAAACGGCTGGTTGATGAATTTCAGCAAGTGGCAAAGAGTAACCAGAACATCCAAACAGTAGAGGACATGGCCAAATTTGTTGACAATTACCCCGAGTACAGGAAAATGCATGGAAATGTGTCAAAACATGTGACTTTGGTAACAGAAATGAGCAAGATAACTGAACAGCGAAAACTTATGACAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGTGGGCAAGGGGCTGCTTTTGAGGCAGTGACAAATCTACTTAACGATGAAAGCATATCAGATGTAGATCGACTCCGTTTGGTCATGCTGTATGCTTTGCGATACGAGAAGGATAGCCCTGTTCAGTTAATGCAACTTTTCAACAAGCTGGCTTCTCGATCTGCCAAGTATAAACCTGGGCTTGTCCAGTTTCTTTTGAAACAAGCAGGTGTTGACAAGAGAACTGGTGATCTTTTCGGAAATCGGGATCTCATGAATATTGCCCGTAACATGGCTCGTGGATTGAAGGGTATTGAGAATGTTTACACCCAGCACCAGCCACTTCTGTTTCAAACCATGGAAAACATTGTCAAAGGGCGGTTGAGAGATATGGACTACCCATTTGTTGGAAATCACTTTCAACAAGGAAGGCCACAGGAAGTGATCATCTTCGTTGTTGGTGGGACAACTTATGAGGAGTCACGATCAGTTGCTCTACAAAATGCCAGCAATACTGGAATTCGTTTTATACTTGGTGGCTCTTCTGTTCTTAATTCCAAAAGTTTTTTTAAGGACTTGGAAGAAGCTCAAAGAGTAGCTCGTATTAGCACTTCAGTTGTTTGA 1707 0.4159 MVLTSSVRDYINRMLQDISGMKVLILDSQTVSIVSVVYSQSDLLQKEVFLVELIDSISKSNELMSHLKAVYFLRPTSENIQLLRRQLGSPRFGECHLFFSNILKDTQIHILADSDEQEVVQQVQEFYADFVAIDPFHFTLHVPSNYIYMLPAVVDSSTLQRFCDRVVDGLAALFLALKRRPIIRYQRTSDVAKRIAQEAAKLMYQQESGLFDFRRTEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLKSIGKFPKDQEEVVLSSEQDSFFKTNMYENFGDIGMNIKRLVDEFQQVAKSNQNIQTVEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKITEQRKLMTVSQTEQELACNGGQGAAFEAVTNLLNDESISDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLFGNRDLMNIARNMARGLKGIENVYTQHQPLLFQTMENIVKGRLRDMDYPFVGNHFQQGRPQEVIIFVVGGTTYEESRSVALQNASNTGIRFILGGSSVLNSKSFFKDLEEAQRVARISTSVV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0546 568 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Lal21g0546 568 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
Lal21g0546 568 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Lal21g0546 568 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Lal21g0546 568 Gene3D - 138 555 IPR027482 -
Lal21g0546 568 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Lal21g0546 568 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Lal21g0546 568 Gene3D - 353 474 - -
Lal21g0546 568 Gene3D - 2 128 IPR043154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0546 Lal-Chr21 3984306 3991594 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0546 K12479 - gmx:100782786 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0546 21 3984306 3991594 Lal21g0546 21 3984306 3991594 ECH
Lal21g0546 21 3984306 3991594 Lal4g0457 4 3219977 3225749 LSH