Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0448 ATGGCTTTGGAGAATTGTTTAAGAGTAACTACTGTTGGCACAGCAAGACCCCAATGTGTTTCTCCATTCTCTTCAACTTCAAGGGAAAAGCTTGTTTTACCAACTTACAAAGGGTTCAAGAAATCCATGCTTACAAACTCAACACTACCTAACCAATCTCTTTATTCAACCCATGGTTCCTATAGAAAATCATCTTTCATTTGCAATGCTCGTGAAGCAGTAGATGGAGTTAGAGCAGTGACTGACTCAACCTGGGAGGAGCTTGTAATTGGAAGTGAAACCCCTGTGCTTGTAGATTTTTGGGCACCATGGTGTGGTCCATGCAGGATGATAGAGCCTATTGTTGGTGAGTTAGCCAAAGAATATGCTGGCAAAATTGCATGCTACAAGCTTAACACTGATGACAATCCAAGTATAGCTACAAAGTATGGCATCAGAAGCATACCAACAGTTCTTTTCTTCAAAAATGGAGAGAAAAAAGAAAGCATAATTGGTGCAGTTCCAAAGTCAACTTTGTCAGCAACAGTGGATAAATATGTTGACACATGA 549 0.4007 MALENCLRVTTVGTARPQCVSPFSSTSREKLVLPTYKGFKKSMLTNSTLPNQSLYSTHGSYRKSSFICNAREAVDGVRAVTDSTWEELVIGSETPVLVDFWAPWCGPCRMIEPIVGELAKEYAGKIACYKLNTDDNPSIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSATVDKYVDT 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0448 182 CDD TRX_family 83 177 - -
Lal4g0448 182 Pfam Thioredoxin 77 178 IPR013766 -
Lal4g0448 182 TIGRFAM thioredoxin: thioredoxin 81 179 IPR005746 GO:0015035
Lal4g0448 182 ProSitePatterns Thioredoxin family active site. 97 115 IPR017937 -
Lal4g0448 182 ProSiteProfiles Thioredoxin domain profile. 43 181 IPR013766 -
Lal4g0448 182 SUPERFAMILY Thioredoxin-like 64 181 IPR036249 -
Lal4g0448 182 PANTHER THIOREDOXIN M-TYPE PROTEIN 24 179 - -
Lal4g0448 182 PRINTS Thioredoxin family signature 96 104 - -
Lal4g0448 182 PRINTS Thioredoxin family signature 104 113 - -
Lal4g0448 182 PRINTS Thioredoxin family signature 144 155 - -
Lal4g0448 182 Gene3D Glutaredoxin 77 181 - -
Lal4g0448 182 PANTHER GEO12009P1 24 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0448 Lal-Chr4 3134252 3137129 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0448 K03671 - gmx:100500292 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0448 4 3134252 3137129 Lal4g0448 4 3134252 3137129 ECH
Lal17g0518 17 3593395 3596601 Lal4g0448 4 3134252 3137129 LSH