Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal17g0518 | ATGAGCCTTATCCACAACAACTCTACAAACCCTGTAACTGTAACTAACTTAATTGAAAAAACTGAAGCACCTAACATGGCCTTGGAGAACTGTTTACGTGTAACAACTATAGGCACTGCAAGACCTCAATGTGTTTCTCCATTTTCTTCAACTTCAAGGGAAAAGCTTGTTTTCCCAACTTACAAAGGATTCAACAAATCAACACTCTCTTACCCATCTCTTTATTCAACAACTGCTTCCTACAAAAAATCAACTTTCATTTGCAATGCTCGTGAAGCTGTAGATGGAGTTCAAGCAGTGACTGAGACAACCTGGGACGAGCTTGTCATTGCAAGTGAAACCCCTGTGCTTGTAGATTTTTGGGCACCATGGTGTGGTCCATGCAGGATGATAGAGCCTATTGTTGGAGAATTAGCCAAAGAATATGCTGGAAAAATTGCATGCTACAAGCTTAACACTGATGACAATCCAAGCATAGCTACAAAGTATGGCATCAGAAGCATACCAACTGTTCTCTTCTTCAAAAATGGAGAGAAAAAAGAAAGCATAATTGGTGCAGTTCCTAAGTCCACTTTATCCGCAACAGTGGATAAATATCTTGATGCATGA | 609 | 0.399 | MSLIHNNSTNPVTVTNLIEKTEAPNMALENCLRVTTIGTARPQCVSPFSSTSREKLVFPTYKGFNKSTLSYPSLYSTTASYKKSTFICNAREAVDGVQAVTETTWDELVIASETPVLVDFWAPWCGPCRMIEPIVGELAKEYAGKIACYKLNTDDNPSIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSATVDKYLDA | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal17g0518 | 202 | Pfam | Thioredoxin | 97 | 198 | IPR013766 | - | |
| Lal17g0518 | 202 | Gene3D | Glutaredoxin | 97 | 201 | - | - | |
| Lal17g0518 | 202 | ProSiteProfiles | Thioredoxin domain profile. | 77 | 201 | IPR013766 | - | |
| Lal17g0518 | 202 | PANTHER | THIOREDOXIN M-TYPE PROTEIN | 49 | 200 | - | - | |
| Lal17g0518 | 202 | PRINTS | Thioredoxin family signature | 116 | 124 | - | - | |
| Lal17g0518 | 202 | PRINTS | Thioredoxin family signature | 124 | 133 | - | - | |
| Lal17g0518 | 202 | PRINTS | Thioredoxin family signature | 164 | 175 | - | - | |
| Lal17g0518 | 202 | SUPERFAMILY | Thioredoxin-like | 84 | 201 | IPR036249 | - | |
| Lal17g0518 | 202 | CDD | TRX_family | 104 | 197 | - | - | |
| Lal17g0518 | 202 | PANTHER | GEO12009P1 | 49 | 200 | - | - | |
| Lal17g0518 | 202 | ProSitePatterns | Thioredoxin family active site. | 117 | 135 | IPR017937 | - | |
| Lal17g0518 | 202 | TIGRFAM | thioredoxin: thioredoxin | 101 | 198 | IPR005746 | GO:0015035 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal17g0518 | Lal-Chr17 | 3593395 | 3596601 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal17g0518 | K03671 | - | gmx:100305596 | 286.96 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal17g0518 | 17 | 3593395 | 3596601 | Lal17g0518 | 17 | 3593395 | 3596601 | ECH | |
| Lal17g0518 | 17 | 3593395 | 3596601 | Lal4g0448 | 4 | 3134252 | 3137129 | LSH |