LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal4g0445	ATGGTTGGTAAGGAGAATTTGAAGACTGAGGACTTGAATTTGTGCTTTGAGAAGCTTATGATGGTGGCTGGTGGTAACAGTGGAATAGGAGGGAACATGAAAGCTGGGGTTATCACTGAATGGAAGGATATTCCTGTTGAGCTCTTGTTGCAAATTTTGTCTCTTGTTGATGATCAAACTGTGATCATAGCTTCTGGAGTTTGTCGCTGTTGGAGAGATGCTATTTACTTTGGGGTATCCCGTTTATCACTCTCATGGTGTGTTAAGAACATGAACAACTTGGTCCTGTCTATTGTTCCTAAGTTCGCAAAATTGCATACTCTGATCTTACGTCAAGACAAGCCTCAACTAGAGGATAATGCTGTTGAGACTATTGCAAATTGCTGTCGTGAGCTGCAGATCCTCGACCTCAGCAAAAGTTTCAAGCTTACTGATCGGTCACTATATGCCGTAGCCCATGGCTGTTGTGAACTTACAAAACTAAACATCAGCGGGTGTTCTGCGTTCAGTGACAATGCTCTTGCTTACCTTGCCAGTTTCTGCAAAAAACTGAAGGTTCTAAATCTTTGTGGATGTGTTAGAACAGCATCTGATACTGCATTACAGGCTATTGGTCGTTACTGCAATCAGTTACAGTCTTTGAATCTTGGATGGTGTGAAAATGTTGGTGATGTCGGAGTCATGAGTTTAGCATATGGGTGTCCTGATCTTAGAACAGTTGACTTATGTGGCTGTGTCCGTATTACAGATGATAGTGTAATTGCTTTGGCTAACAAATGCCACAATTTGAGGTCCCTTGGACTATACTACTGCAAAAACATCACAGACAGAGCAATGTACACATTGGCACAAAGCAAAGTGAACAACAGAATGTGGAGAAGTGTGAAAGGAAGAGAAAGTGATGAGGATGGCCTAAGGACATTGAACATTAGCCAATGCACTGCACTCACTCCTTCTGCTGTTCAAGCTGTTTGTGACTCATTCCCTTCACTTCACACATGCTCAGGTAGACACTCACTCATCATGAGTGGCTGCCTCAATCTCACTTCTGTTCATTGTGCCTGTGCTGTCCATGCGCACCACCGCGCGTTCAGCACTTTCCTTCATCCCCCTTATTGA	1119	0.4334	MVGKENLKTEDLNLCFEKLMMVAGGNSGIGGNMKAGVITEWKDIPVELLLQILSLVDDQTVIIASGVCRCWRDAIYFGVSRLSLSWCVKNMNNLVLSIVPKFAKLHTLILRQDKPQLEDNAVETIANCCRELQILDLSKSFKLTDRSLYAVAHGCCELTKLNISGCSAFSDNALAYLASFCKKLKVLNLCGCVRTASDTALQAIGRYCNQLQSLNLGWCENVGDVGVMSLAYGCPDLRTVDLCGCVRITDDSVIALANKCHNLRSLGLYYCKNITDRAMYTLAQSKVNNRMWRSVKGRESDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHHRAFSTFLHPPY	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal4g0445	372	SUPERFAMILY	RNI-like	79	352	-	-
	Lal4g0445	372	Pfam	F-box-like	42	75	IPR001810	GO:0005515
	Lal4g0445	372	SMART	LRR_CC_2	102	128	IPR006553	-
	Lal4g0445	372	SMART	LRR_CC_2	208	233	IPR006553	-
	Lal4g0445	372	SMART	LRR_CC_2	234	259	IPR006553	-
	Lal4g0445	372	SMART	LRR_CC_2	181	207	IPR006553	-
	Lal4g0445	372	SMART	LRR_CC_2	302	327	IPR006553	-
	Lal4g0445	372	SMART	LRR_CC_2	129	154	IPR006553	-
	Lal4g0445	372	SMART	LRR_CC_2	260	285	IPR006553	-
	Lal4g0445	372	SMART	LRR_CC_2	155	180	IPR006553	-
	Lal4g0445	372	Gene3D	-	38	78	-	-
	Lal4g0445	372	Gene3D	Ribonuclease Inhibitor	79	302	IPR032675	-
	Lal4g0445	372	SMART	fbox_2	44	84	IPR001810	GO:0005515
	Lal4g0445	372	PANTHER	UNCHARACTERIZED	1	353	-	-
	Lal4g0445	372	Pfam	Leucine Rich repeat	208	231	IPR001611	GO:0005515
	Lal4g0445	372	Pfam	Leucine Rich repeat	234	257	IPR001611	GO:0005515
	Lal4g0445	372	PANTHER	F-BOX SKP2A-LIKE PROTEIN	1	353	-	-
	Lal4g0445	372	SUPERFAMILY	F-box domain	41	87	IPR036047	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal4g0445	Lal-Chr4	3107035	3110362	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal4g0445	K03875		-	gmx:100797840	645.195

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal4g0445	4	3107035	3110362	Lal4g0445	4	3107035	3110362	ECH
	Lal17g0514	17	3578237	3581332	Lal4g0445	4	3107035	3110362	LSH