Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal17g0514 | ATGGTTGGCAAGGAGAACCTGAAAACTGAGGAATTGAATTTGTGCTTCGAGAAGCTTATGATGATGGTTAGTGGGAACAGTGGGATAGGAGGGAACATGAAAGTTGGGGTGATCACTGAATGGAAGGATATTCCTGTTGAGCTTTTGGTGCAAATTTTGTCTCTTGTTGATGATCAAACTGTGATCATAGCTTCTGGAGTTTGTCGTGGTTGGAGAGATGCTATTTACTTTGGTGTTGCACGTCTATCACTCTCATGGTGTAGCAAGAACATGAACAATTTGGTCTTGTCTCTTGTTCCCAAATTTGCAAAACTGCAAACTCTAATTCTACGTCAAGACAAGCCTCAACTAGAGGACAATGCCGTTGAGACTATTGCAAATTGCTGTCATGAGCTGCAGATCCTTGACCTCAGCAAAAGTTTCAAGCTTACCGATCGCTCATTGTATGCCATAGCTCACGGTTGTAGTGATCTTACAAAACTAAACATCAGTGGATGTTCGGCATTCAGTGACAGTGCTCTGGCTTACCTTGCTAGTTTCTGCAGAAAACTAAAGGTTCTAAATCTTTGTGGATGTGTTAGAACAGCATCTGATACTGCATTACAGGCTATTGGACGTTACTGCAATGAGTTACAGTCTTTGAATCTTGGCTGGTGTGACAATGTTGGTGATGTTGGAGTGATGAGTTTAGCATATGGGTGTCCTGATCTTAGGACAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCCAACAAATGCCCCCATTTAAGGTCTCTTGGTCTGTACTATTGTAAAAACATTACAGATAGGGCAATGTATTCCTTGGCACAAAGCAAAGTGAAGAACAGGATGTGGGGAAGTGTGAAAGGAGAAAGTGATGAGGATGGCTTAAGGACCTTAAACATTAGCCAATGCACTGCACTCACTCCTTCTGCTGTTCAAGCTGTTTGTGACTCATTCCCTTCACTTCACACATGTTCAGGGAGGCATTCACTCATCATGAGTGGCTGTCTCAACTTGACTTCTGTTCATTGTGCCTGCGCTGTTCATGCGCACCACCGCGCATTCTCCACTTTCCTTAATCCTGCTCATTGA | 1116 | 0.4328 | MVGKENLKTEELNLCFEKLMMMVSGNSGIGGNMKVGVITEWKDIPVELLVQILSLVDDQTVIIASGVCRGWRDAIYFGVARLSLSWCSKNMNNLVLSLVPKFAKLQTLILRQDKPQLEDNAVETIANCCHELQILDLSKSFKLTDRSLYAIAHGCSDLTKLNISGCSAFSDSALAYLASFCRKLKVLNLCGCVRTASDTALQAIGRYCNELQSLNLGWCDNVGDVGVMSLAYGCPDLRTVDLCGCVRITDDSVIALANKCPHLRSLGLYYCKNITDRAMYSLAQSKVKNRMWGSVKGESDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHHRAFSTFLNPAH | 371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal17g0514 | 371 | Gene3D | - | 38 | 79 | - | - | |
| Lal17g0514 | 371 | SUPERFAMILY | RNI-like | 80 | 284 | - | - | |
| Lal17g0514 | 371 | Pfam | F-box-like | 42 | 75 | IPR001810 | GO:0005515 | |
| Lal17g0514 | 371 | SUPERFAMILY | F-box domain | 41 | 77 | IPR036047 | GO:0005515 | |
| Lal17g0514 | 371 | Gene3D | Ribonuclease Inhibitor | 80 | 302 | IPR032675 | - | |
| Lal17g0514 | 371 | Pfam | Leucine Rich repeat | 259 | 283 | IPR001611 | GO:0005515 | |
| Lal17g0514 | 371 | Pfam | Leucine Rich repeat | 208 | 231 | IPR001611 | GO:0005515 | |
| Lal17g0514 | 371 | Pfam | Leucine Rich repeat | 234 | 257 | IPR001611 | GO:0005515 | |
| Lal17g0514 | 371 | SMART | LRR_CC_2 | 155 | 180 | IPR006553 | - | |
| Lal17g0514 | 371 | SMART | LRR_CC_2 | 260 | 285 | IPR006553 | - | |
| Lal17g0514 | 371 | SMART | LRR_CC_2 | 181 | 207 | IPR006553 | - | |
| Lal17g0514 | 371 | SMART | LRR_CC_2 | 102 | 128 | IPR006553 | - | |
| Lal17g0514 | 371 | SMART | LRR_CC_2 | 208 | 233 | IPR006553 | - | |
| Lal17g0514 | 371 | SMART | LRR_CC_2 | 234 | 259 | IPR006553 | - | |
| Lal17g0514 | 371 | SMART | LRR_CC_2 | 129 | 154 | IPR006553 | - | |
| Lal17g0514 | 371 | SMART | LRR_CC_2 | 301 | 326 | IPR006553 | - | |
| Lal17g0514 | 371 | PANTHER | F-BOX SKP2A-LIKE PROTEIN | 1 | 352 | - | - | |
| Lal17g0514 | 371 | PANTHER | UNCHARACTERIZED | 1 | 352 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal17g0514 | Lal-Chr17 | 3578237 | 3581332 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal17g0514 | K03875 | - | gmx:100797840 | 663.299 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal17g0514 | 17 | 3578237 | 3581332 | Lal17g0514 | 17 | 3578237 | 3581332 | ECH | |
| Lal17g0514 | 17 | 3578237 | 3581332 | Lal4g0445 | 4 | 3107035 | 3110362 | LSH |